Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004680

Experiment: Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_004679 and ABIE53_004680 are separated by 403 nucleotidesABIE53_004680 and ABIE53_004681 are separated by 691 nucleotides ABIE53_004679: ABIE53_004679 - diguanylate cyclase (GGDEF)-like protein, at 860,974 to 862,137 _004679 ABIE53_004680: ABIE53_004680 - AmiR/NasT family two-component response regulator, at 862,541 to 862,789 _004680 ABIE53_004681: ABIE53_004681 - benzil reductase ((S)-benzoin forming), at 863,481 to 864,239 _004681 Position (kb) 862 863Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 861.598 kb on + strand, within ABIE53_004679at 861.598 kb on + strand, within ABIE53_004679at 861.598 kb on + strand, within ABIE53_004679at 861.598 kb on + strand, within ABIE53_004679at 861.598 kb on + strand, within ABIE53_004679at 861.598 kb on + strand, within ABIE53_004679at 861.598 kb on + strand, within ABIE53_004679at 861.598 kb on + strand, within ABIE53_004679at 861.599 kb on - strand, within ABIE53_004679at 861.599 kb on - strand, within ABIE53_004679at 861.599 kb on - strand, within ABIE53_004679at 861.599 kb on - strand, within ABIE53_004679at 861.599 kb on - strand, within ABIE53_004679at 861.599 kb on - strand, within ABIE53_004679at 861.669 kb on + strand, within ABIE53_004679at 861.764 kb on - strand, within ABIE53_004679at 861.773 kb on + strand, within ABIE53_004679at 861.773 kb on + strand, within ABIE53_004679at 861.773 kb on + strand, within ABIE53_004679at 862.103 kb on + strandat 862.103 kb on + strandat 862.104 kb on - strandat 862.133 kb on + strandat 862.133 kb on + strandat 862.133 kb on + strandat 862.133 kb on + strandat 862.134 kb on - strandat 862.134 kb on - strandat 862.134 kb on - strandat 862.135 kb on + strandat 862.135 kb on + strandat 862.135 kb on + strandat 862.135 kb on + strandat 862.136 kb on - strandat 862.136 kb on - strandat 862.136 kb on - strandat 862.136 kb on - strandat 862.136 kb on - strandat 862.397 kb on + strandat 862.398 kb on - strandat 862.482 kb on + strandat 862.585 kb on + strand, within ABIE53_004680at 862.585 kb on + strand, within ABIE53_004680at 862.586 kb on - strand, within ABIE53_004680at 862.599 kb on - strand, within ABIE53_004680at 862.600 kb on + strand, within ABIE53_004680at 862.601 kb on - strand, within ABIE53_004680at 862.601 kb on - strand, within ABIE53_004680at 862.601 kb on - strand, within ABIE53_004680at 862.772 kb on + strandat 862.772 kb on + strandat 862.772 kb on + strandat 862.773 kb on - strandat 862.773 kb on - strandat 862.774 kb on + strandat 862.774 kb on + strandat 862.775 kb on - strandat 862.897 kb on + strandat 862.898 kb on - strandat 862.954 kb on + strandat 862.954 kb on + strandat 862.954 kb on + strandat 862.955 kb on - strandat 863.094 kb on - strandat 863.125 kb on - strandat 863.208 kb on + strandat 863.356 kb on + strandat 863.356 kb on + strandat 863.356 kb on + strandat 863.357 kb on - strandat 863.357 kb on - strandat 863.357 kb on - strandat 863.357 kb on - strandat 863.508 kb on - strandat 863.675 kb on + strand, within ABIE53_004681at 863.676 kb on - strand, within ABIE53_004681at 863.705 kb on + strand, within ABIE53_004681at 863.705 kb on + strand, within ABIE53_004681at 863.705 kb on + strand, within ABIE53_004681at 863.705 kb on + strand, within ABIE53_004681at 863.705 kb on + strand, within ABIE53_004681at 863.706 kb on - strand, within ABIE53_004681at 863.706 kb on - strand, within ABIE53_004681at 863.776 kb on + strand, within ABIE53_004681at 863.776 kb on + strand, within ABIE53_004681at 863.776 kb on + strand, within ABIE53_004681at 863.777 kb on - strand, within ABIE53_004681at 863.777 kb on - strand, within ABIE53_004681at 863.777 kb on - strand, within ABIE53_004681at 863.777 kb on - strand, within ABIE53_004681at 863.777 kb on - strand, within ABIE53_004681

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut
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861,598 + ABIE53_004679 0.54 +2.1
861,598 + ABIE53_004679 0.54 -0.8
861,598 + ABIE53_004679 0.54 -1.3
861,598 + ABIE53_004679 0.54 -0.1
861,598 + ABIE53_004679 0.54 +0.4
861,598 + ABIE53_004679 0.54 +1.9
861,598 + ABIE53_004679 0.54 -0.3
861,598 + ABIE53_004679 0.54 -0.2
861,599 - ABIE53_004679 0.54 +0.1
861,599 - ABIE53_004679 0.54 +0.8
861,599 - ABIE53_004679 0.54 -1.2
861,599 - ABIE53_004679 0.54 -0.8
861,599 - ABIE53_004679 0.54 -2.8
861,599 - ABIE53_004679 0.54 +0.8
861,669 + ABIE53_004679 0.60 +0.3
861,764 - ABIE53_004679 0.68 +0.5
861,773 + ABIE53_004679 0.69 +2.4
861,773 + ABIE53_004679 0.69 -1.5
861,773 + ABIE53_004679 0.69 -0.8
862,103 + +0.1
862,103 + -2.7
862,104 - -2.4
862,133 + +0.8
862,133 + +1.6
862,133 + +1.8
862,133 + +0.1
862,134 - +1.8
862,134 - +0.8
862,134 - -0.3
862,135 + +1.8
862,135 + +3.0
862,135 + -1.1
862,135 + +1.9
862,136 - -0.7
862,136 - -0.6
862,136 - +0.4
862,136 - +0.8
862,136 - -0.8
862,397 + -0.5
862,398 - -1.8
862,482 + -0.2
862,585 + ABIE53_004680 0.18 +1.1
862,585 + ABIE53_004680 0.18 -0.2
862,586 - ABIE53_004680 0.18 +1.2
862,599 - ABIE53_004680 0.23 -0.2
862,600 + ABIE53_004680 0.24 +2.6
862,601 - ABIE53_004680 0.24 -1.2
862,601 - ABIE53_004680 0.24 +2.4
862,601 - ABIE53_004680 0.24 +2.4
862,772 + +0.3
862,772 + -0.5
862,772 + -1.4
862,773 - -0.8
862,773 - -2.0
862,774 + -0.2
862,774 + +3.4
862,775 - -0.5
862,897 + -1.2
862,898 - +0.8
862,954 + +0.8
862,954 + -0.8
862,954 + +0.8
862,955 - +0.8
863,094 - +0.1
863,125 - -1.5
863,208 + +0.2
863,356 + +4.5
863,356 + -0.3
863,356 + -1.1
863,357 - +1.8
863,357 - -0.7
863,357 - +2.2
863,357 - +1.4
863,508 - +0.8
863,675 + ABIE53_004681 0.26 -1.2
863,676 - ABIE53_004681 0.26 -0.4
863,705 + ABIE53_004681 0.30 +0.9
863,705 + ABIE53_004681 0.30 +0.8
863,705 + ABIE53_004681 0.30 +0.8
863,705 + ABIE53_004681 0.30 +0.5
863,705 + ABIE53_004681 0.30 -2.7
863,706 - ABIE53_004681 0.30 -0.3
863,706 - ABIE53_004681 0.30 +0.4
863,776 + ABIE53_004681 0.39 -0.2
863,776 + ABIE53_004681 0.39 -2.1
863,776 + ABIE53_004681 0.39 -1.3
863,777 - ABIE53_004681 0.39 -1.3
863,777 - ABIE53_004681 0.39 +0.8
863,777 - ABIE53_004681 0.39 -2.0
863,777 - ABIE53_004681 0.39 +0.1
863,777 - ABIE53_004681 0.39 +0.5

Or see this region's nucleotide sequence