Experiment: Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000695 and ABIE53_000696 are separated by 39 nucleotides ABIE53_000696 and ABIE53_000697 are separated by 2 nucleotides ABIE53_000697 and ABIE53_000698 are separated by 251 nucleotides ABIE53_000698 and ABIE53_000699 are separated by 26 nucleotides
ABIE53_000695: ABIE53_000695 - lipid A 3-O-deacylase, at 751,321 to 751,884
_000695
ABIE53_000696: ABIE53_000696 - ketosteroid isomerase-like protein, at 751,924 to 752,307
_000696
ABIE53_000697: ABIE53_000697 - anthranilate phosphoribosyltransferase, at 752,310 to 753,281
_000697
ABIE53_000698: ABIE53_000698 - fumarylpyruvate hydrolase, at 753,533 to 754,231
_000698
ABIE53_000699: ABIE53_000699 - maleylpyruvate isomerase, at 754,258 to 754,902
_000699
Position (kb) 752
753
754 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 751.358 kb on + strand at 751.563 kb on + strand, within ABIE53_000695 at 751.563 kb on + strand, within ABIE53_000695 at 751.563 kb on + strand, within ABIE53_000695 at 751.563 kb on + strand, within ABIE53_000695 at 751.564 kb on - strand, within ABIE53_000695 at 751.614 kb on + strand, within ABIE53_000695 at 751.614 kb on + strand, within ABIE53_000695 at 751.615 kb on - strand, within ABIE53_000695 at 751.615 kb on - strand, within ABIE53_000695 at 751.615 kb on - strand, within ABIE53_000695 at 751.615 kb on - strand, within ABIE53_000695 at 751.783 kb on + strand, within ABIE53_000695 at 751.784 kb on - strand, within ABIE53_000695 at 751.845 kb on + strand at 751.845 kb on + strand at 751.846 kb on - strand at 751.847 kb on + strand at 751.848 kb on - strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.873 kb on + strand at 751.873 kb on + strand at 751.873 kb on + strand at 751.873 kb on + strand at 751.873 kb on + strand at 751.873 kb on + strand at 751.873 kb on + strand at 751.873 kb on + strand at 751.873 kb on + strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.875 kb on + strand at 751.875 kb on + strand at 751.875 kb on + strand at 751.875 kb on + strand at 751.875 kb on + strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.908 kb on + strand at 751.908 kb on + strand at 751.908 kb on + strand at 751.909 kb on - strand at 751.909 kb on - strand at 752.035 kb on + strand, within ABIE53_000696 at 752.035 kb on + strand, within ABIE53_000696 at 752.035 kb on + strand, within ABIE53_000696 at 752.035 kb on + strand, within ABIE53_000696 at 752.035 kb on + strand, within ABIE53_000696 at 752.035 kb on + strand, within ABIE53_000696 at 752.035 kb on + strand, within ABIE53_000696 at 752.035 kb on + strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.088 kb on + strand, within ABIE53_000696 at 752.088 kb on + strand, within ABIE53_000696 at 752.230 kb on + strand, within ABIE53_000696 at 752.230 kb on + strand, within ABIE53_000696 at 752.230 kb on + strand, within ABIE53_000696 at 752.230 kb on + strand, within ABIE53_000696 at 752.231 kb on - strand, within ABIE53_000696 at 752.231 kb on - strand, within ABIE53_000696 at 752.231 kb on - strand, within ABIE53_000696 at 752.231 kb on - strand, within ABIE53_000696 at 752.231 kb on - strand, within ABIE53_000696 at 752.231 kb on - strand, within ABIE53_000696 at 752.231 kb on - strand, within ABIE53_000696 at 752.231 kb on - strand, within ABIE53_000696 at 752.231 kb on - strand, within ABIE53_000696 at 752.244 kb on + strand, within ABIE53_000696 at 752.244 kb on + strand, within ABIE53_000696 at 752.244 kb on + strand, within ABIE53_000696 at 752.245 kb on - strand, within ABIE53_000696 at 752.311 kb on + strand at 752.311 kb on + strand at 752.311 kb on + strand at 752.311 kb on + strand at 752.311 kb on + strand at 752.312 kb on - strand at 752.312 kb on - strand at 752.312 kb on - strand at 752.440 kb on - strand, within ABIE53_000697 at 752.440 kb on - strand, within ABIE53_000697 at 752.613 kb on + strand, within ABIE53_000697 at 752.613 kb on + strand, within ABIE53_000697 at 752.613 kb on + strand, within ABIE53_000697 at 752.613 kb on + strand, within ABIE53_000697 at 752.614 kb on - strand, within ABIE53_000697 at 752.635 kb on + strand, within ABIE53_000697 at 752.650 kb on + strand, within ABIE53_000697 at 752.650 kb on + strand, within ABIE53_000697 at 752.650 kb on + strand, within ABIE53_000697 at 752.650 kb on + strand, within ABIE53_000697 at 752.650 kb on + strand, within ABIE53_000697 at 752.650 kb on + strand, within ABIE53_000697 at 752.650 kb on + strand, within ABIE53_000697 at 752.650 kb on + strand, within ABIE53_000697 at 752.650 kb on + strand, within ABIE53_000697 at 752.650 kb on + strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.823 kb on - strand, within ABIE53_000697 at 752.990 kb on - strand, within ABIE53_000697 at 752.990 kb on - strand, within ABIE53_000697 at 752.990 kb on - strand, within ABIE53_000697 at 753.107 kb on - strand, within ABIE53_000697 at 753.166 kb on + strand, within ABIE53_000697 at 753.166 kb on + strand, within ABIE53_000697 at 753.166 kb on + strand, within ABIE53_000697 at 753.166 kb on + strand, within ABIE53_000697 at 753.166 kb on + strand, within ABIE53_000697 at 753.166 kb on + strand, within ABIE53_000697 at 753.167 kb on - strand, within ABIE53_000697 at 753.167 kb on - strand, within ABIE53_000697 at 753.167 kb on - strand, within ABIE53_000697 at 753.293 kb on - strand at 753.331 kb on - strand at 753.331 kb on - strand at 753.331 kb on - strand at 753.358 kb on - strand at 753.366 kb on + strand at 753.366 kb on + strand at 753.366 kb on + strand at 753.366 kb on + strand at 753.366 kb on + strand at 753.366 kb on + strand at 753.366 kb on + strand at 753.366 kb on + strand at 753.366 kb on + strand at 753.366 kb on + strand at 753.366 kb on + strand at 753.366 kb on + strand at 753.366 kb on + strand at 753.366 kb on + strand at 753.366 kb on + strand at 753.366 kb on + strand at 753.366 kb on + strand at 753.367 kb on - strand at 753.367 kb on - strand at 753.367 kb on - strand at 753.367 kb on - strand at 753.367 kb on - strand at 753.367 kb on - strand at 753.463 kb on + strand at 753.464 kb on - strand at 753.464 kb on - strand at 753.464 kb on - strand at 753.488 kb on + strand at 753.488 kb on + strand at 753.488 kb on + strand at 753.488 kb on + strand at 753.489 kb on - strand at 753.516 kb on + strand at 753.517 kb on - strand at 753.517 kb on - strand at 753.539 kb on + strand at 753.539 kb on + strand at 753.539 kb on + strand at 753.539 kb on + strand at 753.539 kb on + strand at 753.540 kb on - strand at 753.540 kb on - strand at 753.540 kb on - strand at 753.540 kb on - strand at 753.543 kb on + strand at 753.543 kb on + strand at 753.543 kb on + strand at 753.543 kb on + strand at 753.543 kb on + strand at 753.543 kb on + strand at 753.543 kb on + strand at 753.543 kb on + strand at 753.543 kb on + strand at 753.543 kb on + strand at 753.543 kb on + strand at 753.543 kb on + strand at 753.543 kb on + strand at 753.543 kb on + strand at 753.543 kb on + strand at 753.543 kb on + strand at 753.544 kb on - strand at 753.544 kb on - strand at 753.544 kb on - strand at 753.544 kb on - strand at 753.544 kb on - strand at 753.544 kb on - strand at 753.544 kb on - strand at 753.544 kb on - strand at 753.544 kb on - strand at 753.544 kb on - strand at 753.544 kb on - strand at 753.544 kb on - strand at 753.544 kb on - strand at 753.544 kb on - strand at 753.544 kb on - strand at 753.544 kb on - strand at 753.561 kb on + strand at 753.561 kb on + strand at 753.561 kb on + strand at 753.562 kb on - strand at 753.562 kb on - strand at 753.562 kb on - strand at 753.586 kb on + strand at 753.586 kb on + strand at 753.586 kb on + strand at 753.587 kb on - strand at 753.587 kb on - strand at 753.587 kb on - strand at 753.587 kb on - strand at 753.587 kb on - strand at 753.614 kb on + strand, within ABIE53_000698 at 753.615 kb on - strand, within ABIE53_000698 at 753.632 kb on + strand, within ABIE53_000698 at 753.632 kb on + strand, within ABIE53_000698 at 753.632 kb on + strand, within ABIE53_000698 at 753.632 kb on + strand, within ABIE53_000698 at 753.633 kb on - strand, within ABIE53_000698 at 753.716 kb on + strand, within ABIE53_000698 at 753.716 kb on + strand, within ABIE53_000698 at 753.716 kb on + strand, within ABIE53_000698 at 753.716 kb on + strand, within ABIE53_000698 at 753.716 kb on + strand, within ABIE53_000698 at 753.716 kb on + strand, within ABIE53_000698 at 753.716 kb on + strand, within ABIE53_000698 at 753.716 kb on + strand, within ABIE53_000698 at 753.716 kb on + strand, within ABIE53_000698 at 753.716 kb on + strand, within ABIE53_000698 at 753.716 kb on + strand, within ABIE53_000698 at 753.716 kb on + strand, within ABIE53_000698 at 753.716 kb on + strand, within ABIE53_000698 at 753.717 kb on - strand, within ABIE53_000698 at 753.717 kb on - strand, within ABIE53_000698 at 753.717 kb on - strand, within ABIE53_000698 at 753.717 kb on - strand, within ABIE53_000698 at 753.717 kb on - strand, within ABIE53_000698 at 753.717 kb on - strand, within ABIE53_000698 at 753.717 kb on - strand, within ABIE53_000698 at 753.717 kb on - strand, within ABIE53_000698 at 753.717 kb on - strand, within ABIE53_000698 at 753.717 kb on - strand, within ABIE53_000698 at 753.717 kb on - strand, within ABIE53_000698 at 753.717 kb on - strand, within ABIE53_000698 at 753.717 kb on - strand, within ABIE53_000698 at 753.717 kb on - strand, within ABIE53_000698 at 753.717 kb on - strand, within ABIE53_000698 at 753.717 kb on - strand, within ABIE53_000698 at 753.749 kb on + strand, within ABIE53_000698 at 753.750 kb on - strand, within ABIE53_000698 at 753.851 kb on + strand, within ABIE53_000698 at 753.851 kb on + strand, within ABIE53_000698 at 753.851 kb on + strand, within ABIE53_000698 at 753.851 kb on + strand, within ABIE53_000698 at 753.851 kb on + strand, within ABIE53_000698 at 753.852 kb on - strand, within ABIE53_000698 at 753.852 kb on - strand, within ABIE53_000698 at 753.852 kb on - strand, within ABIE53_000698 at 753.852 kb on - strand, within ABIE53_000698 at 753.852 kb on - strand, within ABIE53_000698 at 753.852 kb on - strand, within ABIE53_000698 at 753.874 kb on + strand, within ABIE53_000698 at 753.875 kb on - strand, within ABIE53_000698 at 753.875 kb on - strand, within ABIE53_000698 at 753.875 kb on - strand, within ABIE53_000698 at 754.084 kb on + strand, within ABIE53_000698 at 754.084 kb on + strand, within ABIE53_000698 at 754.084 kb on + strand, within ABIE53_000698 at 754.084 kb on + strand, within ABIE53_000698 at 754.084 kb on + strand, within ABIE53_000698 at 754.084 kb on + strand, within ABIE53_000698 at 754.085 kb on - strand, within ABIE53_000698 at 754.085 kb on - strand, within ABIE53_000698 at 754.085 kb on - strand, within ABIE53_000698 at 754.085 kb on - strand, within ABIE53_000698 at 754.085 kb on - strand, within ABIE53_000698 at 754.091 kb on + strand, within ABIE53_000698 at 754.091 kb on + strand, within ABIE53_000698 at 754.091 kb on + strand, within ABIE53_000698 at 754.091 kb on + strand, within ABIE53_000698 at 754.091 kb on + strand, within ABIE53_000698 at 754.091 kb on + strand, within ABIE53_000698 at 754.091 kb on + strand, within ABIE53_000698 at 754.091 kb on + strand, within ABIE53_000698 at 754.091 kb on + strand, within ABIE53_000698 at 754.091 kb on + strand, within ABIE53_000698 at 754.091 kb on + strand, within ABIE53_000698 at 754.092 kb on - strand, within ABIE53_000698 at 754.092 kb on - strand, within ABIE53_000698 at 754.092 kb on - strand, within ABIE53_000698 at 754.092 kb on - strand, within ABIE53_000698 at 754.092 kb on - strand, within ABIE53_000698 at 754.092 kb on - strand, within ABIE53_000698 at 754.092 kb on - strand, within ABIE53_000698 at 754.092 kb on - strand, within ABIE53_000698 at 754.092 kb on - strand, within ABIE53_000698 at 754.092 kb on - strand, within ABIE53_000698 at 754.092 kb on - strand, within ABIE53_000698 at 754.267 kb on + strand at 754.267 kb on + strand at 754.267 kb on + strand at 754.267 kb on + strand at 754.267 kb on + strand at 754.268 kb on - strand at 754.268 kb on - strand at 754.268 kb on - strand at 754.268 kb on - strand at 754.268 kb on - strand at 754.268 kb on - strand at 754.268 kb on - strand at 754.273 kb on + strand at 754.273 kb on + strand at 754.273 kb on + strand at 754.273 kb on + strand at 754.273 kb on + strand at 754.274 kb on - strand at 754.274 kb on - strand at 754.274 kb on - strand at 754.274 kb on - strand at 754.274 kb on - strand at 754.274 kb on - strand at 754.274 kb on - strand at 754.274 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut remove 751,358 + -0.1 751,563 + ABIE53_000695 0.43 -1.0 751,563 + ABIE53_000695 0.43 -0.6 751,563 + ABIE53_000695 0.43 -0.5 751,563 + ABIE53_000695 0.43 -1.3 751,564 - ABIE53_000695 0.43 +2.4 751,614 + ABIE53_000695 0.52 +0.2 751,614 + ABIE53_000695 0.52 -1.2 751,615 - ABIE53_000695 0.52 -2.3 751,615 - ABIE53_000695 0.52 -2.3 751,615 - ABIE53_000695 0.52 +0.3 751,615 - ABIE53_000695 0.52 -0.1 751,783 + ABIE53_000695 0.82 -0.3 751,784 - ABIE53_000695 0.82 -0.4 751,845 + +0.4 751,845 + +0.8 751,846 - +0.8 751,847 + -0.1 751,848 - -2.7 751,862 + -2.4 751,862 + +1.8 751,862 + +1.4 751,862 + -1.2 751,862 + +0.8 751,862 + +0.8 751,862 + -1.0 751,862 + +0.4 751,862 + +1.0 751,862 + -1.2 751,862 + -2.5 751,862 + -2.3 751,863 - +0.3 751,863 - -1.2 751,863 - -0.8 751,863 - -1.5 751,863 - -0.5 751,863 - -1.5 751,863 - -0.2 751,863 - -0.6 751,863 - -0.7 751,863 - +0.0 751,863 - -1.1 751,863 - +3.2 751,863 - -0.1 751,863 - -0.9 751,863 - -1.2 751,863 - +0.4 751,863 - +0.6 751,863 - -0.7 751,863 - -0.4 751,863 - -1.5 751,864 + +1.4 751,864 + -0.7 751,864 + -0.7 751,864 + +1.5 751,864 + +0.7 751,864 + +0.8 751,864 + -0.4 751,864 + +0.5 751,864 + -0.2 751,864 + -0.2 751,864 + +1.4 751,864 + +0.0 751,864 + +0.4 751,865 - +0.8 751,865 - -1.0 751,865 - -2.9 751,865 - -0.5 751,865 - -0.2 751,865 - -1.7 751,865 - +1.7 751,865 - +0.4 751,865 - +0.3 751,865 - +0.8 751,865 - +2.4 751,873 + +1.3 751,873 + -0.5 751,873 + -0.6 751,873 + +0.4 751,873 + -1.9 751,873 + +0.8 751,873 + -1.4 751,873 + -2.0 751,873 + -0.4 751,874 - +3.2 751,874 - +2.4 751,874 - -1.5 751,874 - -0.5 751,874 - +0.8 751,874 - +0.5 751,874 - -1.4 751,874 - -0.1 751,874 - -0.7 751,874 - -0.3 751,874 - +1.2 751,874 - +1.0 751,875 + +1.0 751,875 + +0.6 751,875 + -0.4 751,875 + +0.3 751,875 + +1.4 751,876 - +2.3 751,876 - -0.4 751,876 - -1.3 751,876 - +0.8 751,876 - +0.5 751,876 - -1.2 751,876 - -0.7 751,876 - -0.2 751,876 - -0.2 751,876 - +0.5 751,876 - -1.5 751,908 + -0.9 751,908 + +2.4 751,908 + +1.8 751,909 - -0.1 751,909 - -0.7 752,035 + ABIE53_000696 0.29 -1.0 752,035 + ABIE53_000696 0.29 -1.3 752,035 + ABIE53_000696 0.29 +3.8 752,035 + ABIE53_000696 0.29 +2.3 752,035 + ABIE53_000696 0.29 +1.1 752,035 + ABIE53_000696 0.29 +0.2 752,035 + ABIE53_000696 0.29 -2.0 752,035 + ABIE53_000696 0.29 -1.2 752,036 - ABIE53_000696 0.29 -0.7 752,036 - ABIE53_000696 0.29 +0.8 752,036 - ABIE53_000696 0.29 -3.4 752,036 - ABIE53_000696 0.29 -1.0 752,036 - ABIE53_000696 0.29 -0.2 752,036 - ABIE53_000696 0.29 -0.2 752,036 - ABIE53_000696 0.29 -0.7 752,036 - ABIE53_000696 0.29 -1.2 752,036 - ABIE53_000696 0.29 -2.5 752,036 - ABIE53_000696 0.29 +0.5 752,036 - ABIE53_000696 0.29 -1.7 752,036 - ABIE53_000696 0.29 -0.2 752,036 - ABIE53_000696 0.29 +0.3 752,036 - ABIE53_000696 0.29 -0.0 752,036 - ABIE53_000696 0.29 +3.1 752,036 - ABIE53_000696 0.29 -2.2 752,036 - ABIE53_000696 0.29 +0.8 752,036 - ABIE53_000696 0.29 +0.6 752,088 + ABIE53_000696 0.43 +2.7 752,088 + ABIE53_000696 0.43 -0.0 752,230 + ABIE53_000696 0.80 -1.5 752,230 + ABIE53_000696 0.80 -0.1 752,230 + ABIE53_000696 0.80 +0.3 752,230 + ABIE53_000696 0.80 +0.4 752,231 - 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Or see this region's nucleotide sequence