Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3989

Experiment: Carbon source Sucrose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3988 and Dshi_3989 overlap by 4 nucleotidesDshi_3989 and Dshi_3990 overlap by 14 nucleotides Dshi_3988: Dshi_3988 - TRAG family protein (RefSeq), at 48,594 to 50,606 _3988 Dshi_3989: Dshi_3989 - Relaxase/mobilization nuclease family protein (RefSeq), at 50,603 to 52,936 _3989 Dshi_3990: Dshi_3990 - hypothetical protein (RefSeq), at 52,923 to 53,516 _3990 Position (kb) 50 51 52 53Strain fitness (log2 ratio) -2 -1 0 1 2at 49.651 kb on + strand, within Dshi_3988at 49.667 kb on + strand, within Dshi_3988at 49.698 kb on + strand, within Dshi_3988at 49.739 kb on + strand, within Dshi_3988at 49.739 kb on - strand, within Dshi_3988at 49.795 kb on + strand, within Dshi_3988at 49.804 kb on - strand, within Dshi_3988at 49.812 kb on + strand, within Dshi_3988at 49.870 kb on + strand, within Dshi_3988at 49.878 kb on - strand, within Dshi_3988at 49.907 kb on + strand, within Dshi_3988at 50.039 kb on - strand, within Dshi_3988at 50.054 kb on - strand, within Dshi_3988at 50.054 kb on - strand, within Dshi_3988at 50.115 kb on + strand, within Dshi_3988at 50.116 kb on - strand, within Dshi_3988at 50.119 kb on + strand, within Dshi_3988at 50.319 kb on + strand, within Dshi_3988at 50.344 kb on + strand, within Dshi_3988at 50.346 kb on + strand, within Dshi_3988at 50.415 kb on + strandat 50.433 kb on + strandat 50.527 kb on + strandat 50.700 kb on + strandat 50.708 kb on - strandat 50.708 kb on - strandat 50.756 kb on - strandat 50.925 kb on - strand, within Dshi_3989at 51.024 kb on - strand, within Dshi_3989at 51.156 kb on - strand, within Dshi_3989at 51.180 kb on + strand, within Dshi_3989at 51.190 kb on + strand, within Dshi_3989at 51.591 kb on + strand, within Dshi_3989at 51.786 kb on - strand, within Dshi_3989at 51.822 kb on - strand, within Dshi_3989at 51.844 kb on + strand, within Dshi_3989at 51.939 kb on + strand, within Dshi_3989at 52.155 kb on + strand, within Dshi_3989at 52.245 kb on + strand, within Dshi_3989at 52.515 kb on + strand, within Dshi_3989at 52.569 kb on + strand, within Dshi_3989at 52.711 kb on + strandat 52.866 kb on + strandat 52.957 kb on + strandat 53.100 kb on + strand, within Dshi_3990at 53.101 kb on - strand, within Dshi_3990at 53.117 kb on - strand, within Dshi_3990at 53.205 kb on - strand, within Dshi_3990at 53.365 kb on + strand, within Dshi_3990at 53.454 kb on + strand, within Dshi_3990at 53.462 kb on - strandat 53.502 kb on - strandat 53.519 kb on - strandat 53.698 kb on + strandat 53.715 kb on + strandat 53.715 kb on + strandat 53.723 kb on - strandat 53.723 kb on - strandat 53.806 kb on + strandat 53.806 kb on + strandat 53.813 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 10 mM
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49,651 + Dshi_3988 0.53 +0.7
49,667 + Dshi_3988 0.53 -0.4
49,698 + Dshi_3988 0.55 -1.3
49,739 + Dshi_3988 0.57 -0.8
49,739 - Dshi_3988 0.57 +1.1
49,795 + Dshi_3988 0.60 +1.2
49,804 - Dshi_3988 0.60 -0.9
49,812 + Dshi_3988 0.61 -0.7
49,870 + Dshi_3988 0.63 +0.8
49,878 - Dshi_3988 0.64 -1.2
49,907 + Dshi_3988 0.65 +0.4
50,039 - Dshi_3988 0.72 -0.6
50,054 - Dshi_3988 0.73 +1.4
50,054 - Dshi_3988 0.73 +0.2
50,115 + Dshi_3988 0.76 -0.4
50,116 - Dshi_3988 0.76 +1.6
50,119 + Dshi_3988 0.76 -0.4
50,319 + Dshi_3988 0.86 +0.3
50,344 + Dshi_3988 0.87 -0.0
50,346 + Dshi_3988 0.87 +0.0
50,415 + +0.6
50,433 + -0.4
50,527 + +0.3
50,700 + -0.7
50,708 - +0.2
50,708 - -0.9
50,756 - +0.5
50,925 - Dshi_3989 0.14 +0.3
51,024 - Dshi_3989 0.18 -0.3
51,156 - Dshi_3989 0.24 -1.7
51,180 + Dshi_3989 0.25 +1.0
51,190 + Dshi_3989 0.25 +1.2
51,591 + Dshi_3989 0.42 -0.7
51,786 - Dshi_3989 0.51 -1.0
51,822 - Dshi_3989 0.52 -0.4
51,844 + Dshi_3989 0.53 -0.8
51,939 + Dshi_3989 0.57 -1.8
52,155 + Dshi_3989 0.66 +0.3
52,245 + Dshi_3989 0.70 +2.6
52,515 + Dshi_3989 0.82 -2.4
52,569 + Dshi_3989 0.84 -0.7
52,711 + +0.2
52,866 + -0.3
52,957 + -0.0
53,100 + Dshi_3990 0.30 -0.7
53,101 - Dshi_3990 0.30 -0.9
53,117 - Dshi_3990 0.33 -0.5
53,205 - Dshi_3990 0.47 -0.3
53,365 + Dshi_3990 0.74 -2.1
53,454 + Dshi_3990 0.89 -1.2
53,462 - -0.4
53,502 - +0.4
53,519 - +1.8
53,698 + +1.2
53,715 + -1.0
53,715 + -0.4
53,723 - -0.0
53,723 - -0.1
53,806 + -0.1
53,806 + +0.3
53,813 - +0.9

Or see this region's nucleotide sequence