Experiment: Carbon source Sucrose 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2626 and Dshi_2627 are separated by 1 nucleotides Dshi_2627 and Dshi_2628 overlap by 4 nucleotides Dshi_2628 and Dshi_2629 are separated by 27 nucleotides
Dshi_2626: Dshi_2626 - major facilitator superfamily MFS_1 (RefSeq), at 2,784,148 to 2,785,326
_2626
Dshi_2627: Dshi_2627 - nitroreductase (RefSeq), at 2,785,328 to 2,785,978
_2627
Dshi_2628: Dshi_2628 - hypothetical protein (RefSeq), at 2,785,975 to 2,786,685
_2628
Dshi_2629: Dshi_2629 - protein of unknown function DUF1467 (RefSeq), at 2,786,713 to 2,787,000
_2629
Position (kb)
2785
2786 Strain fitness (log2 ratio)
-2
-1
0
1 at 2784.698 kb on - strand, within Dshi_2626 at 2784.702 kb on - strand, within Dshi_2626 at 2784.744 kb on + strand, within Dshi_2626 at 2785.228 kb on - strand at 2785.391 kb on - strand at 2785.493 kb on + strand, within Dshi_2627 at 2785.580 kb on + strand, within Dshi_2627 at 2785.588 kb on - strand, within Dshi_2627 at 2785.603 kb on + strand, within Dshi_2627 at 2785.821 kb on + strand, within Dshi_2627 at 2785.931 kb on - strand at 2786.043 kb on + strand at 2786.375 kb on - strand, within Dshi_2628 at 2786.455 kb on + strand, within Dshi_2628 at 2786.665 kb on - strand at 2786.743 kb on - strand, within Dshi_2629
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 10 mM remove 2,784,698 - Dshi_2626 0.47 -0.3 2,784,702 - Dshi_2626 0.47 +0.5 2,784,744 + Dshi_2626 0.51 -0.2 2,785,228 - -0.5 2,785,391 - -0.7 2,785,493 + Dshi_2627 0.25 -2.0 2,785,580 + Dshi_2627 0.39 +0.0 2,785,588 - Dshi_2627 0.40 -0.5 2,785,603 + Dshi_2627 0.42 -0.8 2,785,821 + Dshi_2627 0.76 -1.4 2,785,931 - +0.2 2,786,043 + -0.5 2,786,375 - Dshi_2628 0.56 +0.3 2,786,455 + Dshi_2628 0.68 -1.9 2,786,665 - -1.7 2,786,743 - Dshi_2629 0.10 -0.5
Or see this region's nucleotide sequence