Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2336

Experiment: Carbon source Sucrose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2334 and Dshi_2335 are separated by 227 nucleotidesDshi_2335 and Dshi_2336 are separated by 77 nucleotidesDshi_2336 and Dshi_2337 are separated by 39 nucleotides Dshi_2334: Dshi_2334 - fumarate hydratase, class II (RefSeq), at 2,463,610 to 2,465,007 _2334 Dshi_2335: Dshi_2335 - arylsulfate sulfotransferase-like protein (RefSeq), at 2,465,235 to 2,465,534 _2335 Dshi_2336: Dshi_2336 - hypothetical protein (RefSeq), at 2,465,612 to 2,465,803 _2336 Dshi_2337: Dshi_2337 - cytochrome P450 (RefSeq), at 2,465,843 to 2,467,219 _2337 Position (kb) 2465 2466Strain fitness (log2 ratio) -1 0 1at 2465.027 kb on + strandat 2465.344 kb on + strand, within Dshi_2335at 2465.398 kb on - strand, within Dshi_2335at 2465.549 kb on - strandat 2465.568 kb on - strandat 2465.741 kb on + strand, within Dshi_2336at 2465.749 kb on - strand, within Dshi_2336at 2465.798 kb on - strandat 2465.875 kb on + strandat 2466.048 kb on - strand, within Dshi_2337at 2466.122 kb on - strand, within Dshi_2337at 2466.300 kb on - strand, within Dshi_2337at 2466.495 kb on + strand, within Dshi_2337at 2466.688 kb on - strand, within Dshi_2337

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 10 mM
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2,465,027 + -0.2
2,465,344 + Dshi_2335 0.36 -0.1
2,465,398 - Dshi_2335 0.54 +1.5
2,465,549 - -1.3
2,465,568 - -1.5
2,465,741 + Dshi_2336 0.67 +0.0
2,465,749 - Dshi_2336 0.71 +1.3
2,465,798 - -1.0
2,465,875 + +0.1
2,466,048 - Dshi_2337 0.15 +0.6
2,466,122 - Dshi_2337 0.20 -0.6
2,466,300 - Dshi_2337 0.33 -0.3
2,466,495 + Dshi_2337 0.47 -0.2
2,466,688 - Dshi_2337 0.61 +0.6

Or see this region's nucleotide sequence