Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0771

Experiment: Carbon source Sucrose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0768 and Dshi_0769 are separated by 87 nucleotidesDshi_0769 and Dshi_0770 are separated by 220 nucleotidesDshi_0770 and Dshi_0771 overlap by 43 nucleotidesDshi_0771 and Dshi_0772 overlap by 7 nucleotidesDshi_0772 and Dshi_0773 overlap by 4 nucleotides Dshi_0768: Dshi_0768 - thymidylate synthase, flavin-dependent (RefSeq), at 775,200 to 776,117 _0768 Dshi_0769: Dshi_0769 - cold-shock DNA-binding domain protein (RefSeq), at 776,205 to 776,414 _0769 Dshi_0770: Dshi_0770 - arsenate reductase and related (RefSeq), at 776,635 to 776,946 _0770 Dshi_0771: Dshi_0771 - DoxX family protein (RefSeq), at 776,904 to 777,470 _0771 Dshi_0772: Dshi_0772 - hypothetical protein (RefSeq), at 777,464 to 778,210 _0772 Dshi_0773: Dshi_0773 - protein of unknown function DUF692 (RefSeq), at 778,207 to 779,157 _0773 Position (kb) 776 777 778Strain fitness (log2 ratio) -1 0 1 2at 776.162 kb on + strandat 776.216 kb on - strandat 776.243 kb on + strand, within Dshi_0769at 776.244 kb on + strand, within Dshi_0769at 776.409 kb on - strandat 776.498 kb on + strandat 776.535 kb on + strandat 776.578 kb on + strandat 776.593 kb on + strandat 776.601 kb on - strandat 776.601 kb on - strandat 776.601 kb on - strandat 776.601 kb on - strandat 776.601 kb on - strandat 776.611 kb on - strandat 776.628 kb on + strandat 776.813 kb on + strand, within Dshi_0770at 776.920 kb on - strandat 776.932 kb on - strandat 776.992 kb on + strand, within Dshi_0771at 776.995 kb on - strand, within Dshi_0771at 777.223 kb on + strand, within Dshi_0771at 777.274 kb on - strand, within Dshi_0771at 777.285 kb on + strand, within Dshi_0771at 777.321 kb on + strand, within Dshi_0771at 777.466 kb on + strandat 777.467 kb on + strandat 777.468 kb on + strandat 777.516 kb on + strandat 777.557 kb on + strand, within Dshi_0772at 777.565 kb on - strand, within Dshi_0772at 777.594 kb on + strand, within Dshi_0772at 777.760 kb on + strand, within Dshi_0772at 777.787 kb on + strand, within Dshi_0772at 777.905 kb on - strand, within Dshi_0772at 777.977 kb on - strand, within Dshi_0772at 778.007 kb on + strand, within Dshi_0772at 778.079 kb on - strand, within Dshi_0772at 778.094 kb on - strand, within Dshi_0772at 778.345 kb on + strand, within Dshi_0773at 778.433 kb on + strand, within Dshi_0773

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 10 mM
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776,162 + -0.4
776,216 - -0.5
776,243 + Dshi_0769 0.18 +2.4
776,244 + Dshi_0769 0.19 +0.9
776,409 - +1.3
776,498 + +0.2
776,535 + +0.1
776,578 + +1.4
776,593 + -0.2
776,601 - +0.3
776,601 - +1.0
776,601 - +0.2
776,601 - +0.8
776,601 - +0.9
776,611 - -0.1
776,628 + +1.5
776,813 + Dshi_0770 0.57 -0.7
776,920 - -1.5
776,932 - +0.3
776,992 + Dshi_0771 0.16 +0.3
776,995 - Dshi_0771 0.16 -0.0
777,223 + Dshi_0771 0.56 -0.8
777,274 - Dshi_0771 0.65 -0.3
777,285 + Dshi_0771 0.67 -0.8
777,321 + Dshi_0771 0.74 +0.2
777,466 + +0.8
777,467 + -1.5
777,468 + -0.6
777,516 + +0.5
777,557 + Dshi_0772 0.12 +0.8
777,565 - Dshi_0772 0.14 +1.4
777,594 + Dshi_0772 0.17 +0.4
777,760 + Dshi_0772 0.40 -0.4
777,787 + Dshi_0772 0.43 -0.1
777,905 - Dshi_0772 0.59 +0.1
777,977 - Dshi_0772 0.69 -0.3
778,007 + Dshi_0772 0.73 +0.8
778,079 - Dshi_0772 0.82 -0.8
778,094 - Dshi_0772 0.84 +0.2
778,345 + Dshi_0773 0.15 +0.3
778,433 + Dshi_0773 0.24 +1.2

Or see this region's nucleotide sequence