Experiment: MoLS4 with L-Histidine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0063.1 and DVUA0064 are separated by 67 nucleotides DVUA0064 and DVUA0065 overlap by 4 nucleotides
DVUA0063.1: DVUA0063.1 - SEED: FIG00604587: hypothetical protein, at 80,089 to 81,096
DVUA0063.1
DVUA0064: DVUA0064 - conserved domain protein (TIGR), at 81,164 to 82,885
DVUA0064
DVUA0065: DVUA0065 - sensor histidine kinase (TIGR), at 82,882 to 84,918
DVUA0065
Position (kb) 81
82
83 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 80.225 kb on - strand, within DVUA0063.1 at 80.421 kb on + strand, within DVUA0063.1 at 80.468 kb on - strand, within DVUA0063.1 at 80.477 kb on - strand, within DVUA0063.1 at 80.505 kb on + strand, within DVUA0063.1 at 80.505 kb on + strand, within DVUA0063.1 at 80.513 kb on - strand, within DVUA0063.1 at 80.513 kb on - strand, within DVUA0063.1 at 80.528 kb on + strand, within DVUA0063.1 at 80.559 kb on - strand, within DVUA0063.1 at 80.561 kb on + strand, within DVUA0063.1 at 80.561 kb on + strand, within DVUA0063.1 at 80.561 kb on + strand, within DVUA0063.1 at 80.568 kb on - strand, within DVUA0063.1 at 80.569 kb on - strand, within DVUA0063.1 at 80.569 kb on - strand, within DVUA0063.1 at 80.569 kb on - strand, within DVUA0063.1 at 80.615 kb on - strand, within DVUA0063.1 at 80.936 kb on - strand, within DVUA0063.1 at 80.951 kb on + strand, within DVUA0063.1 at 81.107 kb on + strand at 81.216 kb on + strand at 81.288 kb on - strand at 81.291 kb on + strand at 81.301 kb on + strand at 81.309 kb on - strand at 81.312 kb on + strand at 81.356 kb on + strand, within DVUA0064 at 81.359 kb on - strand, within DVUA0064 at 81.389 kb on - strand, within DVUA0064 at 81.533 kb on - strand, within DVUA0064 at 81.573 kb on - strand, within DVUA0064 at 81.625 kb on + strand, within DVUA0064 at 81.625 kb on + strand, within DVUA0064 at 81.752 kb on - strand, within DVUA0064 at 81.787 kb on - strand, within DVUA0064 at 81.853 kb on - strand, within DVUA0064 at 81.938 kb on - strand, within DVUA0064 at 81.970 kb on - strand, within DVUA0064 at 82.022 kb on + strand, within DVUA0064 at 82.045 kb on - strand, within DVUA0064 at 82.066 kb on - strand, within DVUA0064 at 82.202 kb on - strand, within DVUA0064 at 82.436 kb on + strand, within DVUA0064 at 82.438 kb on - strand, within DVUA0064 at 82.457 kb on + strand, within DVUA0064 at 82.473 kb on + strand, within DVUA0064 at 82.475 kb on + strand, within DVUA0064 at 82.499 kb on + strand, within DVUA0064 at 82.529 kb on + strand, within DVUA0064 at 82.529 kb on + strand, within DVUA0064 at 82.531 kb on + strand, within DVUA0064 at 82.531 kb on + strand, within DVUA0064 at 82.719 kb on - strand at 82.816 kb on + strand at 82.878 kb on + strand at 82.920 kb on - strand at 83.055 kb on - strand at 83.123 kb on - strand, within DVUA0065 at 83.272 kb on - strand, within DVUA0065 at 83.435 kb on + strand, within DVUA0065 at 83.443 kb on - strand, within DVUA0065 at 83.443 kb on - strand, within DVUA0065 at 83.471 kb on + strand, within DVUA0065 at 83.481 kb on + strand, within DVUA0065 at 83.639 kb on - strand, within DVUA0065 at 83.756 kb on - strand, within DVUA0065 at 83.793 kb on + strand, within DVUA0065 at 83.811 kb on - strand, within DVUA0065 at 83.836 kb on - strand, within DVUA0065 at 83.870 kb on + strand, within DVUA0065
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Histidine as nutrient 10mM remove 80,225 - DVUA0063.1 0.13 +0.2 80,421 + DVUA0063.1 0.33 +0.2 80,468 - DVUA0063.1 0.38 +0.5 80,477 - DVUA0063.1 0.38 -0.8 80,505 + DVUA0063.1 0.41 +0.1 80,505 + DVUA0063.1 0.41 +0.1 80,513 - DVUA0063.1 0.42 -2.6 80,513 - DVUA0063.1 0.42 -2.9 80,528 + DVUA0063.1 0.44 -0.9 80,559 - DVUA0063.1 0.47 +0.1 80,561 + DVUA0063.1 0.47 -0.6 80,561 + DVUA0063.1 0.47 +0.5 80,561 + DVUA0063.1 0.47 -2.1 80,568 - DVUA0063.1 0.48 -1.3 80,569 - DVUA0063.1 0.48 +0.4 80,569 - DVUA0063.1 0.48 -0.3 80,569 - DVUA0063.1 0.48 -0.7 80,615 - DVUA0063.1 0.52 +0.5 80,936 - DVUA0063.1 0.84 +0.9 80,951 + DVUA0063.1 0.86 -0.1 81,107 + -1.0 81,216 + -1.2 81,288 - -0.3 81,291 + -0.6 81,301 + +0.3 81,309 - +0.4 81,312 + +0.4 81,356 + DVUA0064 0.11 -0.9 81,359 - DVUA0064 0.11 -0.4 81,389 - DVUA0064 0.13 +0.1 81,533 - DVUA0064 0.21 -1.2 81,573 - DVUA0064 0.24 +0.8 81,625 + DVUA0064 0.27 -0.1 81,625 + DVUA0064 0.27 -0.7 81,752 - DVUA0064 0.34 -3.1 81,787 - DVUA0064 0.36 -0.0 81,853 - DVUA0064 0.40 -0.3 81,938 - DVUA0064 0.45 -0.5 81,970 - DVUA0064 0.47 +0.4 82,022 + DVUA0064 0.50 +0.1 82,045 - DVUA0064 0.51 -0.1 82,066 - DVUA0064 0.52 +0.2 82,202 - DVUA0064 0.60 +0.7 82,436 + DVUA0064 0.74 -1.4 82,438 - DVUA0064 0.74 -1.7 82,457 + DVUA0064 0.75 +0.2 82,473 + DVUA0064 0.76 -0.4 82,475 + DVUA0064 0.76 -0.8 82,499 + DVUA0064 0.78 +2.5 82,529 + DVUA0064 0.79 -1.9 82,529 + DVUA0064 0.79 +0.3 82,531 + DVUA0064 0.79 -0.0 82,531 + DVUA0064 0.79 +0.5 82,719 - -0.8 82,816 + -0.1 82,878 + -0.1 82,920 - +0.2 83,055 - -2.9 83,123 - DVUA0065 0.12 -0.0 83,272 - DVUA0065 0.19 -1.7 83,435 + DVUA0065 0.27 -2.7 83,443 - DVUA0065 0.28 -1.2 83,443 - DVUA0065 0.28 -3.9 83,471 + DVUA0065 0.29 -0.6 83,481 + DVUA0065 0.29 -0.3 83,639 - DVUA0065 0.37 -0.7 83,756 - DVUA0065 0.43 -0.2 83,793 + DVUA0065 0.45 -2.4 83,811 - DVUA0065 0.46 +0.2 83,836 - DVUA0065 0.47 -0.4 83,870 + DVUA0065 0.49 +0.1
Or see this region's nucleotide sequence