Experiment: MoLS4 with L-Histidine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU3079 and DVU3080 are separated by 261 nucleotides DVU3080 and DVU3081 are separated by 267 nucleotides DVU3081 and DVU3082 are separated by 340 nucleotides
DVU3079: DVU3079 - glyoxalase family protein (TIGR), at 3,221,509 to 3,222,111
DVU3079
DVU3080: DVU3080 - transcriptional regulator, putative (TIGR), at 3,222,373 to 3,222,771
DVU3080
DVU3081: DVU3081 - membrane protein, putative (TIGR), at 3,223,039 to 3,223,941
DVU3081
DVU3082: DVU3082 - methyl-accepting chemotaxis protein (TIGR), at 3,224,282 to 3,226,045
DVU3082
Position (kb)
3223
3224 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3222.097 kb on + strand at 3222.349 kb on - strand at 3222.522 kb on + strand, within DVU3080 at 3222.873 kb on + strand at 3222.881 kb on - strand at 3222.972 kb on + strand at 3223.006 kb on - strand at 3223.023 kb on + strand at 3223.052 kb on + strand at 3223.060 kb on - strand at 3223.070 kb on - strand at 3223.146 kb on + strand, within DVU3081 at 3223.165 kb on + strand, within DVU3081 at 3223.234 kb on + strand, within DVU3081 at 3223.237 kb on - strand, within DVU3081 at 3223.247 kb on + strand, within DVU3081 at 3223.257 kb on + strand, within DVU3081 at 3223.322 kb on + strand, within DVU3081 at 3223.326 kb on + strand, within DVU3081 at 3223.341 kb on - strand, within DVU3081 at 3223.427 kb on + strand, within DVU3081 at 3223.500 kb on - strand, within DVU3081 at 3223.560 kb on + strand, within DVU3081 at 3223.584 kb on + strand, within DVU3081 at 3223.603 kb on - strand, within DVU3081 at 3223.608 kb on - strand, within DVU3081 at 3223.613 kb on - strand, within DVU3081 at 3223.675 kb on + strand, within DVU3081 at 3223.688 kb on + strand, within DVU3081 at 3223.700 kb on + strand, within DVU3081 at 3223.700 kb on + strand, within DVU3081 at 3223.708 kb on - strand, within DVU3081 at 3223.714 kb on - strand, within DVU3081 at 3223.764 kb on - strand, within DVU3081 at 3223.806 kb on + strand, within DVU3081 at 3223.823 kb on + strand, within DVU3081 at 3223.831 kb on - strand, within DVU3081 at 3224.058 kb on - strand at 3224.088 kb on + strand at 3224.116 kb on + strand at 3224.186 kb on + strand at 3224.194 kb on - strand at 3224.281 kb on + strand at 3224.288 kb on - strand at 3224.319 kb on + strand at 3224.361 kb on + strand at 3224.490 kb on + strand, within DVU3082 at 3224.493 kb on - strand, within DVU3082 at 3224.525 kb on + strand, within DVU3082 at 3224.548 kb on + strand, within DVU3082 at 3224.556 kb on - strand, within DVU3082 at 3224.620 kb on - strand, within DVU3082 at 3224.620 kb on - strand, within DVU3082 at 3224.655 kb on + strand, within DVU3082 at 3224.786 kb on + strand, within DVU3082 at 3224.821 kb on + strand, within DVU3082 at 3224.861 kb on - strand, within DVU3082 at 3224.872 kb on - strand, within DVU3082 at 3224.872 kb on - strand, within DVU3082
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Histidine as nutrient 10mM remove 3,222,097 + +0.5 3,222,349 - +0.3 3,222,522 + DVU3080 0.37 -1.0 3,222,873 + -0.7 3,222,881 - -2.6 3,222,972 + +0.2 3,223,006 - -2.5 3,223,023 + +0.0 3,223,052 + -2.5 3,223,060 - -0.0 3,223,070 - +0.4 3,223,146 + DVU3081 0.12 -1.0 3,223,165 + DVU3081 0.14 -3.8 3,223,234 + DVU3081 0.22 +0.7 3,223,237 - DVU3081 0.22 -0.1 3,223,247 + DVU3081 0.23 -3.1 3,223,257 + DVU3081 0.24 -1.0 3,223,322 + DVU3081 0.31 -0.2 3,223,326 + DVU3081 0.32 -0.8 3,223,341 - DVU3081 0.33 -2.2 3,223,427 + DVU3081 0.43 -3.3 3,223,500 - DVU3081 0.51 -1.4 3,223,560 + DVU3081 0.58 +1.5 3,223,584 + DVU3081 0.60 -2.5 3,223,603 - DVU3081 0.62 -2.0 3,223,608 - DVU3081 0.63 -3.0 3,223,613 - DVU3081 0.64 -0.4 3,223,675 + DVU3081 0.70 -0.2 3,223,688 + DVU3081 0.72 +0.9 3,223,700 + DVU3081 0.73 -1.9 3,223,700 + DVU3081 0.73 +0.4 3,223,708 - DVU3081 0.74 +0.0 3,223,714 - DVU3081 0.75 -0.2 3,223,764 - DVU3081 0.80 -0.5 3,223,806 + DVU3081 0.85 +0.4 3,223,823 + DVU3081 0.87 -0.3 3,223,831 - DVU3081 0.88 +1.5 3,224,058 - -2.0 3,224,088 + -0.1 3,224,116 + -0.6 3,224,186 + +0.7 3,224,194 - -0.2 3,224,281 + +0.1 3,224,288 - -1.5 3,224,319 + -0.6 3,224,361 + -0.6 3,224,490 + DVU3082 0.12 -0.5 3,224,493 - DVU3082 0.12 -1.7 3,224,525 + DVU3082 0.14 +0.2 3,224,548 + DVU3082 0.15 +0.1 3,224,556 - DVU3082 0.16 -0.1 3,224,620 - DVU3082 0.19 +0.0 3,224,620 - DVU3082 0.19 -0.2 3,224,655 + DVU3082 0.21 -1.3 3,224,786 + DVU3082 0.29 +0.2 3,224,821 + DVU3082 0.31 +0.1 3,224,861 - DVU3082 0.33 -0.3 3,224,872 - DVU3082 0.33 -0.6 3,224,872 - DVU3082 0.33 -2.0
Or see this region's nucleotide sequence