Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2225

Experiment: MoLS4 with L-Histidine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2223 and DVU2224 are separated by 2 nucleotidesDVU2224 and DVU2225 are separated by 18 nucleotidesDVU2225 and accC are separated by 73 nucleotides DVU2223: DVU2223 - hypothetical protein (TIGR), at 2,315,552 to 2,315,896 DVU2223 DVU2224: DVU2224 - hypothetical protein (TIGR), at 2,315,899 to 2,316,549 DVU2224 DVU2225: DVU2225 - acetyl-CoA carboxylase, carboxyl transferase, alpha/beta subunit (TIGR), at 2,316,568 to 2,318,823 DVU2225 DVU2226: accC - acetyl-CoA carboxylase, biotin carboxylase, putative (TIGR), at 2,318,897 to 2,320,312 accC Position (kb) 2316 2317 2318 2319Strain fitness (log2 ratio) -1 0 1at 2315.638 kb on + strand, within DVU2223at 2315.720 kb on - strand, within DVU2223at 2315.824 kb on - strand, within DVU2223at 2315.879 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Histidine as nutrient 10mM
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2,315,638 + DVU2223 0.25 -0.5
2,315,720 - DVU2223 0.49 -1.2
2,315,824 - DVU2223 0.79 -0.9
2,315,879 - -0.2

Or see this region's nucleotide sequence