Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0922

Experiment: MoLS4 with L-Histidine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0919 and atpI overlap by 32 nucleotidesatpI and DVU0921 are separated by 187 nucleotidesDVU0921 and DVU0922 are separated by 42 nucleotidesDVU0922 and DORF8192 are separated by 344 nucleotidesDORF8192 and DVU0923 overlap by 1 nucleotidesDVU0923 and rumA are separated by 55 nucleotides DVU0919: DVU0919 - hypothetical protein (TIGR), at 1,011,648 to 1,012,082 DVU0919 DVU0920: atpI - ATP synthase protein I (TIGR), at 1,012,051 to 1,012,329 atpI DVU0921: DVU0921 - 5-nitroimidazole antibiotic resistance protein, putative (TIGR), at 1,012,517 to 1,012,984 DVU0921 DVU0922: DVU0922 - cytochrome c family protein (TIGR), at 1,013,027 to 1,013,584 DVU0922 DORF8192: DORF8192 - SEED: FIG00606834: hypothetical protein, at 1,013,929 to 1,014,066 DORF8192 DVU0923: DVU0923 - endoribonuclease, L-PSP family (TIGR), at 1,014,066 to 1,014,464 DVU0923 DVU0924: rumA - 23S rRNA (uracil-5-)-methyltransferase RumA (TIGR), at 1,014,520 to 1,015,926 rumA Position (kb) 1013 1014Strain fitness (log2 ratio) -3 -2 -1 0 1at 1012.105 kb on - strand, within atpIat 1012.164 kb on - strand, within atpIat 1012.176 kb on + strand, within atpIat 1012.181 kb on + strand, within atpIat 1012.183 kb on - strand, within atpIat 1012.190 kb on - strand, within atpIat 1012.245 kb on - strand, within atpIat 1012.332 kb on - strandat 1012.434 kb on + strandat 1012.556 kb on + strandat 1012.654 kb on - strand, within DVU0921at 1012.656 kb on + strand, within DVU0921at 1012.656 kb on + strand, within DVU0921at 1012.671 kb on + strand, within DVU0921at 1012.679 kb on - strand, within DVU0921at 1012.689 kb on + strand, within DVU0921at 1012.697 kb on - strand, within DVU0921at 1012.747 kb on + strand, within DVU0921at 1012.755 kb on - strand, within DVU0921at 1012.774 kb on + strand, within DVU0921at 1012.851 kb on - strand, within DVU0921at 1012.860 kb on + strand, within DVU0921at 1012.860 kb on + strand, within DVU0921at 1012.882 kb on + strand, within DVU0921at 1012.882 kb on + strand, within DVU0921at 1013.030 kb on - strandat 1013.097 kb on + strand, within DVU0922at 1013.110 kb on - strand, within DVU0922at 1013.131 kb on - strand, within DVU0922at 1013.167 kb on - strand, within DVU0922at 1013.167 kb on - strand, within DVU0922at 1013.243 kb on - strand, within DVU0922at 1013.291 kb on - strand, within DVU0922at 1013.405 kb on + strand, within DVU0922at 1013.415 kb on + strand, within DVU0922at 1013.465 kb on + strand, within DVU0922at 1013.484 kb on - strand, within DVU0922at 1013.502 kb on + strand, within DVU0922at 1013.515 kb on - strand, within DVU0922at 1013.540 kb on + strandat 1013.550 kb on + strandat 1013.619 kb on + strandat 1013.679 kb on - strandat 1013.706 kb on - strandat 1013.706 kb on - strandat 1013.724 kb on + strandat 1013.724 kb on + strandat 1013.732 kb on - strandat 1013.764 kb on - strandat 1013.897 kb on - strandat 1013.927 kb on + strandat 1013.946 kb on + strand, within DORF8192at 1013.946 kb on + strand, within DORF8192at 1014.012 kb on - strand, within DORF8192at 1014.086 kb on + strandat 1014.251 kb on + strand, within DVU0923at 1014.259 kb on - strand, within DVU0923at 1014.269 kb on - strand, within DVU0923at 1014.335 kb on + strand, within DVU0923

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Histidine as nutrient 10mM
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1,012,105 - atpI DVU0920 0.19 -1.5
1,012,164 - atpI DVU0920 0.41 -2.1
1,012,176 + atpI DVU0920 0.45 -0.2
1,012,181 + atpI DVU0920 0.47 -0.5
1,012,183 - atpI DVU0920 0.47 -2.0
1,012,190 - atpI DVU0920 0.50 +0.6
1,012,245 - atpI DVU0920 0.70 -1.6
1,012,332 - -2.8
1,012,434 + -0.3
1,012,556 + +0.4
1,012,654 - DVU0921 0.29 -1.2
1,012,656 + DVU0921 0.30 +1.6
1,012,656 + DVU0921 0.30 -0.8
1,012,671 + DVU0921 0.33 -2.5
1,012,679 - DVU0921 0.35 -2.4
1,012,689 + DVU0921 0.37 -0.6
1,012,697 - DVU0921 0.38 -1.7
1,012,747 + DVU0921 0.49 +1.0
1,012,755 - DVU0921 0.51 +0.1
1,012,774 + DVU0921 0.55 -1.8
1,012,851 - DVU0921 0.71 -0.1
1,012,860 + DVU0921 0.73 -1.7
1,012,860 + DVU0921 0.73 -0.4
1,012,882 + DVU0921 0.78 +0.0
1,012,882 + DVU0921 0.78 -1.0
1,013,030 - -2.9
1,013,097 + DVU0922 0.13 -0.3
1,013,110 - DVU0922 0.15 -1.2
1,013,131 - DVU0922 0.19 -1.2
1,013,167 - DVU0922 0.25 -1.9
1,013,167 - DVU0922 0.25 +0.0
1,013,243 - DVU0922 0.39 -2.7
1,013,291 - DVU0922 0.47 -1.1
1,013,405 + DVU0922 0.68 -2.7
1,013,415 + DVU0922 0.70 +0.5
1,013,465 + DVU0922 0.78 -0.5
1,013,484 - DVU0922 0.82 +0.2
1,013,502 + DVU0922 0.85 +1.6
1,013,515 - DVU0922 0.87 -1.4
1,013,540 + +0.5
1,013,550 + +0.1
1,013,619 + -0.6
1,013,679 - +0.2
1,013,706 - -0.2
1,013,706 - +0.1
1,013,724 + +0.6
1,013,724 + +0.6
1,013,732 - +0.8
1,013,764 - +1.0
1,013,897 - -2.5
1,013,927 + -2.7
1,013,946 + DORF8192 0.12 +0.0
1,013,946 + DORF8192 0.12 -0.4
1,014,012 - DORF8192 0.60 +0.6
1,014,086 + -2.7
1,014,251 + DVU0923 0.46 -1.4
1,014,259 - DVU0923 0.48 +0.2
1,014,269 - DVU0923 0.51 -2.4
1,014,335 + DVU0923 0.67 -1.7

Or see this region's nucleotide sequence