Experiment: MoLS4 with L-Histidine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fabF and DORF42491 overlap by 1 nucleotides DORF42491 and bioF overlap by 28 nucleotides
DVU2563: fabF - beta-ketoacyl synthase, putative (TIGR), at 2,674,645 to 2,676,093
fabF
DORF42491: DORF42491 - SEED: FIG00602458: hypothetical protein, at 2,676,093 to 2,676,686
DORF42491
DVU2564: bioF - 8-amino-7-oxononanoate synthase (Dmitry Rodionov), at 2,676,659 to 2,677,933
bioF
Position (kb)
2676
2677 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2675.139 kb on + strand, within fabF at 2675.152 kb on - strand, within fabF at 2675.185 kb on + strand, within fabF at 2675.188 kb on - strand, within fabF at 2675.204 kb on - strand, within fabF at 2675.279 kb on + strand, within fabF at 2675.364 kb on - strand, within fabF at 2675.365 kb on - strand, within fabF at 2675.413 kb on + strand, within fabF at 2675.456 kb on - strand, within fabF at 2675.593 kb on - strand, within fabF at 2675.623 kb on + strand, within fabF at 2675.628 kb on + strand, within fabF at 2675.649 kb on + strand, within fabF at 2675.715 kb on - strand, within fabF at 2675.758 kb on - strand, within fabF at 2675.758 kb on - strand, within fabF at 2675.758 kb on - strand, within fabF at 2675.849 kb on - strand, within fabF at 2675.860 kb on + strand, within fabF at 2675.885 kb on - strand, within fabF at 2675.885 kb on - strand, within fabF at 2676.008 kb on + strand at 2676.016 kb on - strand at 2676.016 kb on - strand at 2676.016 kb on - strand at 2676.175 kb on - strand, within DORF42491 at 2676.264 kb on - strand, within DORF42491 at 2676.269 kb on - strand, within DORF42491 at 2676.284 kb on - strand, within DORF42491 at 2676.309 kb on + strand, within DORF42491 at 2676.326 kb on + strand, within DORF42491 at 2676.398 kb on + strand, within DORF42491 at 2676.446 kb on + strand, within DORF42491 at 2676.481 kb on + strand, within DORF42491 at 2676.510 kb on - strand, within DORF42491 at 2676.513 kb on - strand, within DORF42491 at 2676.515 kb on - strand, within DORF42491 at 2676.520 kb on - strand, within DORF42491 at 2676.543 kb on + strand, within DORF42491 at 2676.544 kb on + strand, within DORF42491 at 2676.554 kb on - strand, within DORF42491 at 2676.565 kb on + strand, within DORF42491 at 2676.565 kb on + strand, within DORF42491 at 2676.565 kb on + strand, within DORF42491 at 2676.567 kb on - strand, within DORF42491 at 2676.573 kb on - strand, within DORF42491 at 2676.641 kb on + strand at 2676.643 kb on + strand at 2676.651 kb on - strand at 2676.670 kb on - strand at 2676.671 kb on + strand at 2676.679 kb on - strand at 2676.681 kb on + strand at 2676.689 kb on - strand at 2676.689 kb on - strand at 2676.724 kb on - strand at 2676.766 kb on - strand at 2676.870 kb on + strand, within bioF at 2676.887 kb on + strand, within bioF at 2676.982 kb on - strand, within bioF at 2677.056 kb on - strand, within bioF at 2677.092 kb on - strand, within bioF at 2677.148 kb on - strand, within bioF at 2677.159 kb on - strand, within bioF at 2677.217 kb on - strand, within bioF at 2677.308 kb on - strand, within bioF at 2677.400 kb on + strand, within bioF at 2677.409 kb on - strand, within bioF at 2677.480 kb on + strand, within bioF at 2677.480 kb on + strand, within bioF at 2677.488 kb on - strand, within bioF at 2677.676 kb on - strand, within bioF
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Histidine as nutrient 10mM remove 2,675,139 + fabF DVU2563 0.34 -0.3 2,675,152 - fabF DVU2563 0.35 +0.0 2,675,185 + fabF DVU2563 0.37 -1.1 2,675,188 - fabF DVU2563 0.37 -2.2 2,675,204 - fabF DVU2563 0.39 -0.0 2,675,279 + fabF DVU2563 0.44 -0.4 2,675,364 - fabF DVU2563 0.50 +0.2 2,675,365 - fabF DVU2563 0.50 +0.8 2,675,413 + fabF DVU2563 0.53 -3.0 2,675,456 - fabF DVU2563 0.56 -0.5 2,675,593 - fabF DVU2563 0.65 +0.2 2,675,623 + fabF DVU2563 0.67 -2.5 2,675,628 + fabF DVU2563 0.68 -0.1 2,675,649 + fabF DVU2563 0.69 -2.4 2,675,715 - fabF DVU2563 0.74 -0.5 2,675,758 - fabF DVU2563 0.77 -0.1 2,675,758 - fabF DVU2563 0.77 -0.5 2,675,758 - fabF DVU2563 0.77 -1.3 2,675,849 - fabF DVU2563 0.83 -0.4 2,675,860 + fabF DVU2563 0.84 -2.7 2,675,885 - fabF DVU2563 0.86 -0.2 2,675,885 - fabF DVU2563 0.86 -1.5 2,676,008 + -0.4 2,676,016 - -0.4 2,676,016 - +0.3 2,676,016 - -0.7 2,676,175 - DORF42491 0.14 -2.4 2,676,264 - DORF42491 0.29 -1.0 2,676,269 - DORF42491 0.30 -2.7 2,676,284 - DORF42491 0.32 -2.0 2,676,309 + DORF42491 0.36 +0.4 2,676,326 + DORF42491 0.39 +0.1 2,676,398 + DORF42491 0.51 -1.1 2,676,446 + DORF42491 0.59 -2.5 2,676,481 + DORF42491 0.65 -3.2 2,676,510 - DORF42491 0.70 -0.2 2,676,513 - DORF42491 0.71 -3.0 2,676,515 - DORF42491 0.71 +1.3 2,676,520 - DORF42491 0.72 -0.4 2,676,543 + DORF42491 0.76 +2.6 2,676,544 + DORF42491 0.76 +0.6 2,676,554 - DORF42491 0.78 -1.8 2,676,565 + DORF42491 0.79 +0.2 2,676,565 + DORF42491 0.79 +0.1 2,676,565 + DORF42491 0.79 -0.5 2,676,567 - DORF42491 0.80 +1.8 2,676,573 - DORF42491 0.81 +0.1 2,676,641 + -2.6 2,676,643 + -0.4 2,676,651 - -2.3 2,676,670 - -0.9 2,676,671 + +0.6 2,676,679 - +0.8 2,676,681 + +1.1 2,676,689 - -0.1 2,676,689 - +0.1 2,676,724 - +0.2 2,676,766 - -0.8 2,676,870 + bioF DVU2564 0.17 -0.9 2,676,887 + bioF DVU2564 0.18 +0.3 2,676,982 - bioF DVU2564 0.25 -0.1 2,677,056 - bioF DVU2564 0.31 -2.0 2,677,092 - bioF DVU2564 0.34 -0.6 2,677,148 - bioF DVU2564 0.38 +0.3 2,677,159 - bioF DVU2564 0.39 -0.5 2,677,217 - bioF DVU2564 0.44 -0.6 2,677,308 - bioF DVU2564 0.51 -3.1 2,677,400 + bioF DVU2564 0.58 -0.5 2,677,409 - bioF DVU2564 0.59 -2.0 2,677,480 + bioF DVU2564 0.64 +1.6 2,677,480 + bioF DVU2564 0.64 -0.2 2,677,488 - bioF DVU2564 0.65 -0.3 2,677,676 - bioF DVU2564 0.80 -0.3
Or see this region's nucleotide sequence