Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF42491

Experiment: MoLS4 with L-Histidine as nutrient 10mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntfabF and DORF42491 overlap by 1 nucleotidesDORF42491 and bioF overlap by 28 nucleotides DVU2563: fabF - beta-ketoacyl synthase, putative (TIGR), at 2,674,645 to 2,676,093 fabF DORF42491: DORF42491 - SEED: FIG00602458: hypothetical protein, at 2,676,093 to 2,676,686 DORF42491 DVU2564: bioF - 8-amino-7-oxononanoate synthase (Dmitry Rodionov), at 2,676,659 to 2,677,933 bioF Position (kb) 2676 2677Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2675.139 kb on + strand, within fabFat 2675.152 kb on - strand, within fabFat 2675.185 kb on + strand, within fabFat 2675.188 kb on - strand, within fabFat 2675.204 kb on - strand, within fabFat 2675.279 kb on + strand, within fabFat 2675.364 kb on - strand, within fabFat 2675.365 kb on - strand, within fabFat 2675.413 kb on + strand, within fabFat 2675.456 kb on - strand, within fabFat 2675.593 kb on - strand, within fabFat 2675.623 kb on + strand, within fabFat 2675.628 kb on + strand, within fabFat 2675.649 kb on + strand, within fabFat 2675.715 kb on - strand, within fabFat 2675.758 kb on - strand, within fabFat 2675.758 kb on - strand, within fabFat 2675.758 kb on - strand, within fabFat 2675.849 kb on - strand, within fabFat 2675.860 kb on + strand, within fabFat 2675.885 kb on - strand, within fabFat 2675.885 kb on - strand, within fabFat 2676.008 kb on + strandat 2676.016 kb on - strandat 2676.016 kb on - strandat 2676.016 kb on - strandat 2676.175 kb on - strand, within DORF42491at 2676.264 kb on - strand, within DORF42491at 2676.269 kb on - strand, within DORF42491at 2676.284 kb on - strand, within DORF42491at 2676.309 kb on + strand, within DORF42491at 2676.326 kb on + strand, within DORF42491at 2676.398 kb on + strand, within DORF42491at 2676.446 kb on + strand, within DORF42491at 2676.481 kb on + strand, within DORF42491at 2676.510 kb on - strand, within DORF42491at 2676.513 kb on - strand, within DORF42491at 2676.515 kb on - strand, within DORF42491at 2676.520 kb on - strand, within DORF42491at 2676.543 kb on + strand, within DORF42491at 2676.544 kb on + strand, within DORF42491at 2676.554 kb on - strand, within DORF42491at 2676.565 kb on + strand, within DORF42491at 2676.565 kb on + strand, within DORF42491at 2676.565 kb on + strand, within DORF42491at 2676.567 kb on - strand, within DORF42491at 2676.573 kb on - strand, within DORF42491at 2676.641 kb on + strandat 2676.643 kb on + strandat 2676.651 kb on - strandat 2676.670 kb on - strandat 2676.671 kb on + strandat 2676.679 kb on - strandat 2676.681 kb on + strandat 2676.689 kb on - strandat 2676.689 kb on - strandat 2676.724 kb on - strandat 2676.766 kb on - strandat 2676.870 kb on + strand, within bioFat 2676.887 kb on + strand, within bioFat 2676.982 kb on - strand, within bioFat 2677.056 kb on - strand, within bioFat 2677.092 kb on - strand, within bioFat 2677.148 kb on - strand, within bioFat 2677.159 kb on - strand, within bioFat 2677.217 kb on - strand, within bioFat 2677.308 kb on - strand, within bioFat 2677.400 kb on + strand, within bioFat 2677.409 kb on - strand, within bioFat 2677.480 kb on + strand, within bioFat 2677.480 kb on + strand, within bioFat 2677.488 kb on - strand, within bioFat 2677.676 kb on - strand, within bioF

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Histidine as nutrient 10mM
remove
2,675,139 + fabF DVU2563 0.34 -0.3
2,675,152 - fabF DVU2563 0.35 +0.0
2,675,185 + fabF DVU2563 0.37 -1.1
2,675,188 - fabF DVU2563 0.37 -2.2
2,675,204 - fabF DVU2563 0.39 -0.0
2,675,279 + fabF DVU2563 0.44 -0.4
2,675,364 - fabF DVU2563 0.50 +0.2
2,675,365 - fabF DVU2563 0.50 +0.8
2,675,413 + fabF DVU2563 0.53 -3.0
2,675,456 - fabF DVU2563 0.56 -0.5
2,675,593 - fabF DVU2563 0.65 +0.2
2,675,623 + fabF DVU2563 0.67 -2.5
2,675,628 + fabF DVU2563 0.68 -0.1
2,675,649 + fabF DVU2563 0.69 -2.4
2,675,715 - fabF DVU2563 0.74 -0.5
2,675,758 - fabF DVU2563 0.77 -0.1
2,675,758 - fabF DVU2563 0.77 -0.5
2,675,758 - fabF DVU2563 0.77 -1.3
2,675,849 - fabF DVU2563 0.83 -0.4
2,675,860 + fabF DVU2563 0.84 -2.7
2,675,885 - fabF DVU2563 0.86 -0.2
2,675,885 - fabF DVU2563 0.86 -1.5
2,676,008 + -0.4
2,676,016 - -0.4
2,676,016 - +0.3
2,676,016 - -0.7
2,676,175 - DORF42491 0.14 -2.4
2,676,264 - DORF42491 0.29 -1.0
2,676,269 - DORF42491 0.30 -2.7
2,676,284 - DORF42491 0.32 -2.0
2,676,309 + DORF42491 0.36 +0.4
2,676,326 + DORF42491 0.39 +0.1
2,676,398 + DORF42491 0.51 -1.1
2,676,446 + DORF42491 0.59 -2.5
2,676,481 + DORF42491 0.65 -3.2
2,676,510 - DORF42491 0.70 -0.2
2,676,513 - DORF42491 0.71 -3.0
2,676,515 - DORF42491 0.71 +1.3
2,676,520 - DORF42491 0.72 -0.4
2,676,543 + DORF42491 0.76 +2.6
2,676,544 + DORF42491 0.76 +0.6
2,676,554 - DORF42491 0.78 -1.8
2,676,565 + DORF42491 0.79 +0.2
2,676,565 + DORF42491 0.79 +0.1
2,676,565 + DORF42491 0.79 -0.5
2,676,567 - DORF42491 0.80 +1.8
2,676,573 - DORF42491 0.81 +0.1
2,676,641 + -2.6
2,676,643 + -0.4
2,676,651 - -2.3
2,676,670 - -0.9
2,676,671 + +0.6
2,676,679 - +0.8
2,676,681 + +1.1
2,676,689 - -0.1
2,676,689 - +0.1
2,676,724 - +0.2
2,676,766 - -0.8
2,676,870 + bioF DVU2564 0.17 -0.9
2,676,887 + bioF DVU2564 0.18 +0.3
2,676,982 - bioF DVU2564 0.25 -0.1
2,677,056 - bioF DVU2564 0.31 -2.0
2,677,092 - bioF DVU2564 0.34 -0.6
2,677,148 - bioF DVU2564 0.38 +0.3
2,677,159 - bioF DVU2564 0.39 -0.5
2,677,217 - bioF DVU2564 0.44 -0.6
2,677,308 - bioF DVU2564 0.51 -3.1
2,677,400 + bioF DVU2564 0.58 -0.5
2,677,409 - bioF DVU2564 0.59 -2.0
2,677,480 + bioF DVU2564 0.64 +1.6
2,677,480 + bioF DVU2564 0.64 -0.2
2,677,488 - bioF DVU2564 0.65 -0.3
2,677,676 - bioF DVU2564 0.80 -0.3

Or see this region's nucleotide sequence