Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20080

Experiment: diet=HighFatHighSugar; sample=FecalPellet; mouse14; day2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=HighFatHighSugar; sample=FecalPellet; mouse14; day2
2,304,570	+		BBR_RS20075	0.24	+0.8
2,304,580	+		BBR_RS20075	0.25	-0.3
2,304,580	+		BBR_RS20075	0.25	-2.8
2,304,588	-		BBR_RS20075	0.26	+1.2
2,304,698	+		BBR_RS20075	0.37	+0.9
2,304,734	+		BBR_RS20075	0.40	+1.1
2,304,757	+		BBR_RS20075	0.42	+0.6
2,304,773	+		BBR_RS20075	0.44	+0.6
2,304,773	+		BBR_RS20075	0.44	+0.0
2,304,773	+		BBR_RS20075	0.44	+0.5
2,304,773	+		BBR_RS20075	0.44	+1.2
2,304,773	+		BBR_RS20075	0.44	+0.9
2,304,773	+		BBR_RS20075	0.44	-0.6
2,304,773	+		BBR_RS20075	0.44	+0.4
2,304,773	+		BBR_RS20075	0.44	+1.4
2,304,773	+		BBR_RS20075	0.44	+0.1
2,304,781	-		BBR_RS20075	0.45	-0.3
2,304,781	-		BBR_RS20075	0.45	+0.5
2,304,781	-		BBR_RS20075	0.45	-0.9
2,304,789	-		BBR_RS20075	0.46	-2.0
2,304,817	+		BBR_RS20075	0.48	-2.2
2,304,817	+		BBR_RS20075	0.48	+0.4
2,304,817	+		BBR_RS20075	0.48	-0.4
2,304,817	+		BBR_RS20075	0.48	-1.3
2,304,817	+		BBR_RS20075	0.48	-0.2
2,304,822	+		BBR_RS20075	0.49	+0.9
2,304,822	+		BBR_RS20075	0.49	+0.5
2,304,822	+		BBR_RS20075	0.49	+2.2
2,304,825	-		BBR_RS20075	0.49	+0.7
2,304,825	-		BBR_RS20075	0.49	+1.0
2,304,832	-		BBR_RS20075	0.50	+0.2
2,304,847	+		BBR_RS20075	0.51	+0.4
2,304,849	+		BBR_RS20075	0.52	+0.7
2,304,854	+		BBR_RS20075	0.52	+0.2
2,304,854	+		BBR_RS20075	0.52	+1.2
2,304,854	+		BBR_RS20075	0.52	+0.0
2,304,854	+		BBR_RS20075	0.52	+1.6
2,304,857	-		BBR_RS20075	0.52	-1.3
2,304,857	-		BBR_RS20075	0.52	+0.8
2,304,862	-		BBR_RS20075	0.53	-0.9
2,304,862	-		BBR_RS20075	0.53	-0.5
2,304,877	-		BBR_RS20075	0.54	+0.7
2,304,879	+		BBR_RS20075	0.54	+1.0
2,304,882	-		BBR_RS20075	0.55	+1.0
2,304,887	-		BBR_RS20075	0.55	-1.3
2,304,887	-		BBR_RS20075	0.55	+0.6
2,304,887	-		BBR_RS20075	0.55	+1.9
2,304,887	-		BBR_RS20075	0.55	+0.8
2,305,017	-		BBR_RS20075	0.68	+0.2
2,305,033	+		BBR_RS20075	0.70	-0.8
2,305,041	-		BBR_RS20075	0.70	-1.3
2,305,047	+		BBR_RS20075	0.71	+2.4
2,305,051	+		BBR_RS20075	0.71	+0.9
2,305,051	+		BBR_RS20075	0.71	-0.5
2,305,054	-		BBR_RS20075	0.72	-1.4
2,305,056	+		BBR_RS20075	0.72	-0.5
2,305,059	-		BBR_RS20075	0.72	-0.5
2,305,059	-		BBR_RS20075	0.72	+1.1
2,305,064	-		BBR_RS20075	0.73	-1.1
2,305,064	-		BBR_RS20075	0.73	+0.8
2,305,071	-		BBR_RS20075	0.73	-0.0
2,305,093	-		BBR_RS20075	0.76	+0.4
2,305,112	-		BBR_RS20075	0.77	+1.3
2,305,131	-		BBR_RS20075	0.79	-1.4
2,305,131	-		BBR_RS20075	0.79	+0.6
2,305,136	-		BBR_RS20075	0.80	-0.5
2,305,142	+		BBR_RS20075	0.80	+0.3
2,305,170	+		BBR_RS20075	0.83	+0.6
2,305,170	+		BBR_RS20075	0.83	-0.5
2,305,170	+		BBR_RS20075	0.83	-1.8
2,305,178	-		BBR_RS20075	0.84	-0.6
2,305,178	-		BBR_RS20075	0.84	-0.4
2,305,227	+		BBR_RS20075	0.89	+0.4
2,305,235	-		BBR_RS20075	0.89	-0.3
2,305,247	+				+0.1
2,305,255	-				+1.3
2,305,290	-				+0.2
2,305,299	+				+0.9
2,305,304	+				+0.8
2,305,327	-				-0.5
2,305,335	+				+0.0
2,305,340	+				+0.3
2,305,350	+				+0.4
2,305,407	-				+1.1
2,305,428	-				+1.5
2,305,436	-				+1.4
2,305,455	+				+0.6
2,305,458	+				+1.4
2,305,459	-				+1.0
2,305,465	+				+1.7
2,305,473	-				+0.8
2,305,473	-				+3.5
2,305,473	-				+1.3
2,305,495	+				+0.8
2,305,508	-				+0.4
2,305,539	-				+0.2
2,305,567	-				+1.5
2,305,582	-				+3.0
2,305,587	-				+2.7
2,305,604	+				+3.5
2,305,612	-				+3.1
2,305,617	-				+3.4
2,305,629	-				+3.9
2,305,630	-				+2.1
2,305,637	+				+3.8
2,305,639	-				+3.3
2,305,641	+				+3.8
2,305,645	-				+3.8
2,305,649	-				+3.6
2,305,649	-				+4.1
2,305,649	-				+4.1
2,305,649	-				+3.5
2,305,668	-				+3.8
2,305,676	-				+3.9
2,305,690	-		BBR_RS20080	0.10	+3.5
2,305,697	-		BBR_RS20080	0.11	+4.6
2,305,707	-		BBR_RS20080	0.12	+4.0
2,305,725	-		BBR_RS20080	0.13	+4.2
2,305,744	-		BBR_RS20080	0.14	+2.6
2,305,751	-		BBR_RS20080	0.15	+2.7
2,305,765	-		BBR_RS20080	0.16	+3.6
2,305,765	-		BBR_RS20080	0.16	+4.3
2,305,767	-		BBR_RS20080	0.16	+4.6
2,305,775	+		BBR_RS20080	0.17	+4.9
2,305,775	+		BBR_RS20080	0.17	+4.6
2,305,775	+		BBR_RS20080	0.17	+4.1
2,305,775	+		BBR_RS20080	0.17	+4.4
2,305,775	+		BBR_RS20080	0.17	+4.4
2,305,775	+		BBR_RS20080	0.17	+4.3
2,305,775	+		BBR_RS20080	0.17	+4.1
2,305,783	-		BBR_RS20080	0.17	+3.3
2,305,783	-		BBR_RS20080	0.17	+3.1
2,305,783	-		BBR_RS20080	0.17	+3.8
2,305,785	+		BBR_RS20080	0.18	+4.0
2,305,793	-		BBR_RS20080	0.18	+4.1
2,305,797	-		BBR_RS20080	0.18	+4.2
2,305,798	-		BBR_RS20080	0.18	+3.5
2,305,798	-		BBR_RS20080	0.18	+3.4
2,305,801	+		BBR_RS20080	0.19	+3.4
2,305,835	-		BBR_RS20080	0.21	+4.7
2,305,854	-		BBR_RS20080	0.23	+4.5
2,305,865	-		BBR_RS20080	0.23	+4.4
2,305,901	+		BBR_RS20080	0.26	+4.4
2,305,901	-		BBR_RS20080	0.26	+4.4
2,305,909	-		BBR_RS20080	0.27	+4.1
2,305,909	-		BBR_RS20080	0.27	+4.2
2,305,909	-		BBR_RS20080	0.27	+3.8
2,305,924	+		BBR_RS20080	0.28	+4.7
2,305,924	+		BBR_RS20080	0.28	+2.5
2,305,932	-		BBR_RS20080	0.28	+4.4
2,305,948	+		BBR_RS20080	0.30	+4.5
2,305,948	+		BBR_RS20080	0.30	+3.9
2,305,955	-		BBR_RS20080	0.30	+4.0
2,305,965	-		BBR_RS20080	0.31	+4.8
2,305,986	-		BBR_RS20080	0.32	+4.7
2,306,008	-		BBR_RS20080	0.34	+3.8
2,306,015	+		BBR_RS20080	0.35	+4.4
2,306,022	+		BBR_RS20080	0.35	+4.5
2,306,023	-		BBR_RS20080	0.35	+4.1
2,306,023	-		BBR_RS20080	0.35	+3.9
2,306,023	-		BBR_RS20080	0.35	+4.1
2,306,023	-		BBR_RS20080	0.35	+4.1
2,306,023	-		BBR_RS20080	0.35	+4.0
2,306,023	-		BBR_RS20080	0.35	+4.9
2,306,030	-		BBR_RS20080	0.36	+4.4
2,306,030	-		BBR_RS20080	0.36	+4.8
2,306,035	-		BBR_RS20080	0.36	+4.0
2,306,035	-		BBR_RS20080	0.36	+3.5
2,306,035	-		BBR_RS20080	0.36	+3.9
2,306,035	-		BBR_RS20080	0.36	+3.7
2,306,035	-		BBR_RS20080	0.36	+3.5
2,306,056	-		BBR_RS20080	0.38	+4.0
2,306,076	+		BBR_RS20080	0.39	+4.1
2,306,077	-		BBR_RS20080	0.39	+3.8
2,306,077	-		BBR_RS20080	0.39	+3.6
2,306,077	-		BBR_RS20080	0.39	+4.0
2,306,077	-		BBR_RS20080	0.39	+3.7
2,306,077	-		BBR_RS20080	0.39	+4.2
2,306,096	-		BBR_RS20080	0.41	+4.3
2,306,096	-		BBR_RS20080	0.41	+3.9
2,306,098	+		BBR_RS20080	0.41	+3.9
2,306,104	+		BBR_RS20080	0.41	+3.4
2,306,106	-		BBR_RS20080	0.41	+4.8
2,306,114	+		BBR_RS20080	0.42	+4.6
2,306,134	-		BBR_RS20080	0.43	+4.3
2,306,144	-		BBR_RS20080	0.44	+4.7
2,306,163	+		BBR_RS20080	0.46	+4.7
2,306,179	-		BBR_RS20080	0.47	+3.3
2,306,179	-		BBR_RS20080	0.47	+3.9
2,306,179	-		BBR_RS20080	0.47	+4.0
2,306,179	-		BBR_RS20080	0.47	+3.9
2,306,231	+		BBR_RS20080	0.51	+3.6
2,306,264	+		BBR_RS20080	0.53	+4.3
2,306,267	-		BBR_RS20080	0.53	+4.7
2,306,272	-		BBR_RS20080	0.54	+4.5
2,306,288	-		BBR_RS20080	0.55	+4.1
2,306,305	-		BBR_RS20080	0.56	+4.3
2,306,353	-		BBR_RS20080	0.60	+4.6
2,306,353	-		BBR_RS20080	0.60	+4.5
2,306,353	-		BBR_RS20080	0.60	+4.6
2,306,354	-		BBR_RS20080	0.60	+4.8
2,306,354	-		BBR_RS20080	0.60	+4.7
2,306,354	-		BBR_RS20080	0.60	+4.3
2,306,384	-		BBR_RS20080	0.62	+4.5
2,306,394	-		BBR_RS20080	0.63	+4.7
2,306,396	-		BBR_RS20080	0.63	+4.7
2,306,445	-		BBR_RS20080	0.67	+4.8
2,306,450	-		BBR_RS20080	0.67	+4.8
2,306,479	-		BBR_RS20080	0.69	+4.6
2,306,517	+		BBR_RS20080	0.72	+4.7
2,306,529	+		BBR_RS20080	0.73	+4.7
2,306,532	-		BBR_RS20080	0.73	+4.9
2,306,542	+		BBR_RS20080	0.74	+3.8
2,306,557	-		BBR_RS20080	0.75	+4.6
2,306,579	+		BBR_RS20080	0.76	+5.3
2,306,585	-		BBR_RS20080	0.77	+5.2
2,306,585	-		BBR_RS20080	0.77	+4.4
2,306,604	-		BBR_RS20080	0.78	+4.6
2,306,609	-		BBR_RS20080	0.79	+4.6
2,306,609	-		BBR_RS20080	0.79	+4.4
2,306,609	-		BBR_RS20080	0.79	+4.9
2,306,615	+		BBR_RS20080	0.79	+4.4
2,306,615	+		BBR_RS20080	0.79	+4.7
2,306,641	-		BBR_RS20080	0.81	+4.9
2,306,651	-		BBR_RS20080	0.82	+4.9
2,306,651	-		BBR_RS20080	0.82	+4.9
2,306,651	-		BBR_RS20080	0.82	+4.7
2,306,651	-		BBR_RS20080	0.82	+4.2
2,306,651	-		BBR_RS20080	0.82	+4.9
2,306,666	+		BBR_RS20080	0.83	+4.4
2,306,672	+		BBR_RS20080	0.83	+3.8
2,306,672	+		BBR_RS20080	0.83	+3.6
2,306,673	-		BBR_RS20080	0.83	+4.4
2,306,673	-		BBR_RS20080	0.83	+4.6
2,306,673	-		BBR_RS20080	0.83	+5.4
2,306,674	-		BBR_RS20080	0.84	+4.3
2,306,674	-		BBR_RS20080	0.84	+3.9
2,306,674	-		BBR_RS20080	0.84	+4.0
2,306,680	-		BBR_RS20080	0.84	+4.3
2,306,695	-		BBR_RS20080	0.85	+4.8
2,306,695	-		BBR_RS20080	0.85	+3.4
2,306,695	-		BBR_RS20080	0.85	+4.8
2,306,697	-		BBR_RS20080	0.85	+4.6
2,306,698	+		BBR_RS20080	0.85	+5.1
2,306,698	+		BBR_RS20080	0.85	+3.1
2,306,699	+		BBR_RS20080	0.85	+4.5
2,306,702	-		BBR_RS20080	0.86	+3.0
2,306,706	-		BBR_RS20080	0.86	+5.0
2,306,713	-		BBR_RS20080	0.86	+5.0
2,306,718	-		BBR_RS20080	0.87	+3.9
2,306,718	-		BBR_RS20080	0.87	+5.0
2,306,718	-		BBR_RS20080	0.87	+4.5
2,306,725	-		BBR_RS20080	0.87	+4.2
2,306,757	-		BBR_RS20080	0.90	+4.8
2,306,769	-				+5.5
2,306,769	-				+4.8
2,306,770	-				+5.7
2,306,770	-				+4.8
2,306,770	-				+4.1
2,306,826	+				+4.8
2,306,844	-				+5.6
2,306,870	-				+5.1
2,306,904	+				+4.6
2,306,910	+				+4.7
2,306,929	+				+4.6
2,306,937	-				+4.6
2,306,937	-				+4.5
2,306,937	-				+4.8
2,306,951	-				+4.5
2,306,952	-				+4.4
2,306,965	-				+4.5
2,306,969	+				+4.5
2,306,969	+				+4.2
2,306,969	-				+4.3
2,306,977	-				+4.2
2,306,977	-				+3.7
2,306,977	-				+4.1
2,307,002	+				+2.4
2,307,030	-				+0.5
2,307,078	-				-1.2
2,307,154	-				+1.5
2,307,156	-				-1.1
2,307,205	+				+1.2
2,307,205	+				-0.1
2,307,205	+				+0.3
2,307,205	-				+0.8
2,307,207	-				-0.5
2,307,207	-				+0.9
2,307,207	-				+1.1
2,307,222	+				+1.2
2,307,222	+				+0.4
2,307,222	+				+1.3
2,307,222	+				+0.2
2,307,222	+				-0.2
2,307,263	+				+0.2
2,307,271	-				+0.8
2,307,271	-				-1.5
2,307,271	-				+1.1
2,307,283	+				-0.9
2,307,287	+				-0.5
2,307,288	+				+0.2
2,307,288	+				+1.3
2,307,291	-				+0.5
2,307,291	-				-0.6
2,307,293	+				-0.7
2,307,296	-				+0.1
2,307,296	-				+2.9
2,307,296	-				+0.8
2,307,321	+				+1.6
2,307,325	+				+0.9
2,307,327	+				-0.6
2,307,329	-				+0.4
2,307,329	-				-0.6
2,307,329	-				-0.9
2,307,329	-				+1.0
2,307,329	-				+1.2
2,307,329	-				+0.5
2,307,332	+				+0.7
2,307,332	+				-2.0
2,307,333	-				-1.2
2,307,337	+				-0.5
2,307,337	+				-1.6
2,307,337	+				-1.6
2,307,340	-				-1.4
2,307,340	-				-0.2
2,307,340	-				-0.5
2,307,346	+				+0.5
2,307,354	+				-1.4
2,307,354	+				-0.3
2,307,354	+				+0.4
2,307,356	+				+0.8
2,307,373	-		BBR_RS20085	0.12	+0.1
2,307,408	-		BBR_RS20085	0.17	+1.1
2,307,421	+		BBR_RS20085	0.18	-0.4
2,307,421	+		BBR_RS20085	0.18	+1.1
2,307,421	+		BBR_RS20085	0.18	-1.4
2,307,427	-		BBR_RS20085	0.19	+0.2
2,307,429	-		BBR_RS20085	0.19	-2.1
2,307,438	+		BBR_RS20085	0.21	+0.1
2,307,440	+		BBR_RS20085	0.21	-1.4
2,307,464	+		BBR_RS20085	0.24	-0.4
2,307,470	+		BBR_RS20085	0.25	-1.8
2,307,492	+		BBR_RS20085	0.28	+0.4
2,307,492	+		BBR_RS20085	0.28	-0.3
2,307,492	+		BBR_RS20085	0.28	+0.1
2,307,500	-		BBR_RS20085	0.29	+1.1
2,307,500	-		BBR_RS20085	0.29	+1.2
2,307,505	-		BBR_RS20085	0.30	+0.4
2,307,514	+		BBR_RS20085	0.31	+0.1
2,307,529	-		BBR_RS20085	0.33	-3.0
2,307,551	-		BBR_RS20085	0.37	+0.5
2,307,551	-		BBR_RS20085	0.37	-1.8
2,307,551	-		BBR_RS20085	0.37	-0.1
2,307,553	+		BBR_RS20085	0.37	-1.1
2,307,556	-		BBR_RS20085	0.37	-0.2
2,307,561	-		BBR_RS20085	0.38	-0.6
2,307,561	-		BBR_RS20085	0.38	-2.0
2,307,578	-		BBR_RS20085	0.40	+0.0
2,307,598	+		BBR_RS20085	0.43	-0.1
2,307,598	+		BBR_RS20085	0.43	+1.1
2,307,598	+		BBR_RS20085	0.43	-0.6
2,307,598	+		BBR_RS20085	0.43	-2.7
2,307,600	-		BBR_RS20085	0.43	+0.4
2,307,600	-		BBR_RS20085	0.43	-1.5
2,307,606	-		BBR_RS20085	0.44	-1.5
2,307,606	-		BBR_RS20085	0.44	-0.1
2,307,628	+		BBR_RS20085	0.47	+0.0
2,307,628	+		BBR_RS20085	0.47	-0.4
2,307,628	+		BBR_RS20085	0.47	-1.2
2,307,630	+		BBR_RS20085	0.48	-0.1
2,307,630	+		BBR_RS20085	0.48	-0.6
2,307,636	-		BBR_RS20085	0.48	-0.4
2,307,636	-		BBR_RS20085	0.48	+0.0
2,307,636	-		BBR_RS20085	0.48	+0.9
2,307,636	-		BBR_RS20085	0.48	-1.7
2,307,638	-		BBR_RS20085	0.49	+1.6
2,307,638	-		BBR_RS20085	0.49	-0.2
2,307,638	-		BBR_RS20085	0.49	-1.8
2,307,641	-		BBR_RS20085	0.49	+0.7
2,307,656	+		BBR_RS20085	0.51	-0.1
2,307,656	-		BBR_RS20085	0.51	-1.1
2,307,661	+		BBR_RS20085	0.52	+1.5
2,307,664	-		BBR_RS20085	0.52	+0.9
2,307,666	-		BBR_RS20085	0.53	+0.3
2,307,666	-		BBR_RS20085	0.53	-0.4
2,307,666	-		BBR_RS20085	0.53	+0.1
2,307,667	+		BBR_RS20085	0.53	-0.1
2,307,667	+		BBR_RS20085	0.53	+0.3
2,307,668	+		BBR_RS20085	0.53	+0.4
2,307,674	+		BBR_RS20085	0.54	-1.5
2,307,686	+		BBR_RS20085	0.55	+0.3
2,307,691	+		BBR_RS20085	0.56	+1.7
2,307,694	-		BBR_RS20085	0.57	+1.4
2,307,694	-		BBR_RS20085	0.57	-1.0
2,307,694	-		BBR_RS20085	0.57	-1.9
2,307,708	+		BBR_RS20085	0.59	-1.0
2,307,717	+		BBR_RS20085	0.60	+0.9
2,307,717	+		BBR_RS20085	0.60	+0.1
2,307,717	+		BBR_RS20085	0.60	-2.6
2,307,727	+		BBR_RS20085	0.61	-2.4
2,307,727	+		BBR_RS20085	0.61	+0.5
2,307,732	-		BBR_RS20085	0.62	-3.6
2,307,735	-		BBR_RS20085	0.62	+1.8
2,307,735	-		BBR_RS20085	0.62	-1.1
2,307,735	-		BBR_RS20085	0.62	+0.3
2,307,736	-		BBR_RS20085	0.62	+0.5
2,307,762	+		BBR_RS20085	0.66	+0.5
2,307,762	+		BBR_RS20085	0.66	+0.6
2,307,771	+		BBR_RS20085	0.67	+0.7
2,307,782	+		BBR_RS20085	0.69	+1.4
2,307,801	-		BBR_RS20085	0.72	-0.2
2,307,801	-		BBR_RS20085	0.72	+0.1
2,307,802	-		BBR_RS20085	0.72	-1.0
2,307,814	-		BBR_RS20085	0.73	+0.2
2,307,820	-		BBR_RS20085	0.74	-1.4
2,307,845	-		BBR_RS20085	0.78	-0.5
2,307,862	+		BBR_RS20085	0.80	+0.2
2,307,862	-		BBR_RS20085	0.80	+0.9
2,307,864	+		BBR_RS20085	0.80	-0.5
2,307,864	+		BBR_RS20085	0.80	+0.6
2,307,864	+		BBR_RS20085	0.80	+0.1
2,307,867	+		BBR_RS20085	0.81	+0.9
2,307,871	-		BBR_RS20085	0.81	+0.6
2,307,871	-		BBR_RS20085	0.81	-0.0
2,307,871	-		BBR_RS20085	0.81	+0.5