Experiment: Motility_chemotaxis, R2A; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_006399 and ABIE53_006400 are separated by 52 nucleotides ABIE53_006400 and ABIE53_006401 are separated by 274 nucleotides ABIE53_006401 and ABIE53_006402 are separated by 126 nucleotides
ABIE53_006399: ABIE53_006399 - peptide/nickel transport system substrate-binding protein, at 2,777,032 to 2,778,621
_006399
ABIE53_006400: ABIE53_006400 - hypothetical protein, at 2,778,674 to 2,778,829
_006400
ABIE53_006401: ABIE53_006401 - hypothetical protein, at 2,779,104 to 2,779,247
_006401
ABIE53_006402: ABIE53_006402 - FMNH2-dependent dimethyl sulfone monooxygenase, at 2,779,374 to 2,780,582
_006402
Position (kb)
2778
2779 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2777.954 kb on + strand, within ABIE53_006399 at 2777.955 kb on - strand, within ABIE53_006399 at 2777.975 kb on + strand, within ABIE53_006399 at 2778.029 kb on - strand, within ABIE53_006399 at 2778.062 kb on + strand, within ABIE53_006399 at 2778.062 kb on + strand, within ABIE53_006399 at 2778.062 kb on + strand, within ABIE53_006399 at 2778.092 kb on + strand, within ABIE53_006399 at 2778.092 kb on + strand, within ABIE53_006399 at 2778.093 kb on - strand, within ABIE53_006399 at 2778.182 kb on + strand, within ABIE53_006399 at 2778.183 kb on - strand, within ABIE53_006399 at 2778.250 kb on + strand, within ABIE53_006399 at 2778.358 kb on + strand, within ABIE53_006399 at 2778.404 kb on + strand, within ABIE53_006399 at 2778.405 kb on - strand, within ABIE53_006399 at 2778.810 kb on + strand, within ABIE53_006400 at 2778.811 kb on - strand, within ABIE53_006400 at 2778.831 kb on + strand at 2778.832 kb on - strand at 2778.884 kb on + strand at 2778.980 kb on + strand at 2779.095 kb on - strand at 2779.272 kb on - strand at 2779.358 kb on + strand at 2779.411 kb on + strand at 2779.411 kb on + strand at 2779.412 kb on - strand at 2779.587 kb on + strand, within ABIE53_006402 at 2779.588 kb on - strand, within ABIE53_006402 at 2779.588 kb on - strand, within ABIE53_006402 at 2779.777 kb on - strand, within ABIE53_006402 at 2779.777 kb on - strand, within ABIE53_006402
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_chemotaxis, R2A; outer cut remove 2,777,954 + ABIE53_006399 0.58 -1.9 2,777,955 - ABIE53_006399 0.58 -0.1 2,777,975 + ABIE53_006399 0.59 +0.9 2,778,029 - ABIE53_006399 0.63 +1.9 2,778,062 + ABIE53_006399 0.65 -0.3 2,778,062 + ABIE53_006399 0.65 -1.6 2,778,062 + ABIE53_006399 0.65 -0.4 2,778,092 + ABIE53_006399 0.67 +0.1 2,778,092 + ABIE53_006399 0.67 -1.7 2,778,093 - ABIE53_006399 0.67 +0.5 2,778,182 + ABIE53_006399 0.72 +0.6 2,778,183 - ABIE53_006399 0.72 -2.6 2,778,250 + ABIE53_006399 0.77 -1.4 2,778,358 + ABIE53_006399 0.83 +1.1 2,778,404 + ABIE53_006399 0.86 +0.1 2,778,405 - ABIE53_006399 0.86 -3.3 2,778,810 + ABIE53_006400 0.87 -1.7 2,778,811 - ABIE53_006400 0.88 +0.5 2,778,831 + +0.1 2,778,832 - -0.4 2,778,884 + -3.2 2,778,980 + -0.4 2,779,095 - +3.6 2,779,272 - -0.5 2,779,358 + -0.7 2,779,411 + +1.6 2,779,411 + +0.7 2,779,412 - -1.3 2,779,587 + ABIE53_006402 0.18 +2.6 2,779,588 - ABIE53_006402 0.18 +0.6 2,779,588 - ABIE53_006402 0.18 +0.5 2,779,777 - ABIE53_006402 0.33 -1.1 2,779,777 - ABIE53_006402 0.33 -1.5
Or see this region's nucleotide sequence