Experiment: Motility_chemotaxis, R2A; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004807 and ABIE53_004808 overlap by 25 nucleotides ABIE53_004808 and ABIE53_004809 overlap by 4 nucleotides ABIE53_004809 and ABIE53_004810 are separated by 11 nucleotides ABIE53_004810 and ABIE53_004811 are separated by 41 nucleotides
ABIE53_004807: ABIE53_004807 - tRNA pseudouridine38-40 synthase, at 1,014,250 to 1,015,062
_004807
ABIE53_004808: ABIE53_004808 - phosphoribosylanthranilate isomerase, at 1,015,038 to 1,015,781
_004808
ABIE53_004809: ABIE53_004809 - tryptophan synthase beta chain, at 1,015,778 to 1,017,031
_004809
ABIE53_004810: ABIE53_004810 - site-specific DNA-methyltransferase (adenine-specific), at 1,017,043 to 1,017,954
_004810
ABIE53_004811: ABIE53_004811 - tryptophan synthase alpha chain, at 1,017,996 to 1,018,808
_004811
Position (kb)
1015
1016
1017
1018 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 1014.862 kb on + strand, within ABIE53_004807 at 1014.863 kb on - strand, within ABIE53_004807 at 1014.863 kb on - strand, within ABIE53_004807 at 1014.863 kb on - strand, within ABIE53_004807 at 1014.863 kb on - strand, within ABIE53_004807 at 1014.863 kb on - strand, within ABIE53_004807 at 1014.863 kb on - strand, within ABIE53_004807 at 1014.863 kb on - strand, within ABIE53_004807 at 1014.961 kb on + strand, within ABIE53_004807 at 1014.961 kb on + strand, within ABIE53_004807 at 1014.961 kb on + strand, within ABIE53_004807 at 1014.979 kb on + strand, within ABIE53_004807 at 1015.037 kb on + strand at 1015.037 kb on + strand at 1015.037 kb on + strand at 1015.583 kb on + strand, within ABIE53_004808 at 1017.188 kb on + strand, within ABIE53_004810 at 1017.189 kb on - strand, within ABIE53_004810 at 1017.195 kb on + strand, within ABIE53_004810 at 1017.195 kb on + strand, within ABIE53_004810 at 1017.196 kb on - strand, within ABIE53_004810 at 1017.196 kb on - strand, within ABIE53_004810 at 1017.256 kb on + strand, within ABIE53_004810 at 1017.256 kb on + strand, within ABIE53_004810 at 1017.256 kb on + strand, within ABIE53_004810 at 1017.256 kb on + strand, within ABIE53_004810 at 1017.327 kb on + strand, within ABIE53_004810 at 1017.328 kb on - strand, within ABIE53_004810 at 1017.358 kb on + strand, within ABIE53_004810 at 1017.358 kb on + strand, within ABIE53_004810 at 1017.358 kb on + strand, within ABIE53_004810 at 1017.358 kb on + strand, within ABIE53_004810 at 1017.358 kb on + strand, within ABIE53_004810 at 1017.358 kb on + strand, within ABIE53_004810 at 1017.358 kb on + strand, within ABIE53_004810 at 1017.358 kb on + strand, within ABIE53_004810 at 1017.358 kb on + strand, within ABIE53_004810 at 1017.359 kb on - strand, within ABIE53_004810 at 1017.359 kb on - strand, within ABIE53_004810 at 1017.359 kb on - strand, within ABIE53_004810 at 1017.359 kb on - strand, within ABIE53_004810 at 1017.359 kb on - strand, within ABIE53_004810 at 1017.359 kb on - strand, within ABIE53_004810 at 1017.359 kb on - strand, within ABIE53_004810 at 1017.379 kb on + strand, within ABIE53_004810 at 1017.380 kb on - strand, within ABIE53_004810 at 1017.533 kb on - strand, within ABIE53_004810 at 1017.563 kb on - strand, within ABIE53_004810 at 1017.594 kb on + strand, within ABIE53_004810 at 1017.594 kb on + strand, within ABIE53_004810 at 1017.632 kb on - strand, within ABIE53_004810 at 1017.656 kb on + strand, within ABIE53_004810 at 1017.835 kb on + strand, within ABIE53_004810 at 1017.836 kb on - strand, within ABIE53_004810 at 1017.853 kb on + strand, within ABIE53_004810 at 1017.854 kb on - strand, within ABIE53_004810 at 1017.959 kb on - strand at 1017.974 kb on + strand at 1017.974 kb on + strand at 1017.974 kb on + strand at 1017.974 kb on + strand at 1017.974 kb on + strand at 1017.974 kb on + strand at 1017.975 kb on - strand at 1017.975 kb on - strand at 1017.975 kb on - strand at 1017.975 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_chemotaxis, R2A; outer cut remove 1,014,862 + ABIE53_004807 0.75 -0.3 1,014,863 - ABIE53_004807 0.75 -0.9 1,014,863 - ABIE53_004807 0.75 -2.1 1,014,863 - ABIE53_004807 0.75 -0.3 1,014,863 - ABIE53_004807 0.75 +0.7 1,014,863 - ABIE53_004807 0.75 +0.4 1,014,863 - ABIE53_004807 0.75 -0.9 1,014,863 - ABIE53_004807 0.75 -3.1 1,014,961 + ABIE53_004807 0.87 -2.1 1,014,961 + ABIE53_004807 0.87 -4.6 1,014,961 + ABIE53_004807 0.87 -0.3 1,014,979 + ABIE53_004807 0.90 -0.8 1,015,037 + -0.6 1,015,037 + -0.3 1,015,037 + -0.1 1,015,583 + ABIE53_004808 0.73 -1.9 1,017,188 + ABIE53_004810 0.16 -0.9 1,017,189 - ABIE53_004810 0.16 -4.0 1,017,195 + ABIE53_004810 0.17 -2.1 1,017,195 + ABIE53_004810 0.17 +1.3 1,017,196 - ABIE53_004810 0.17 -0.3 1,017,196 - ABIE53_004810 0.17 +0.7 1,017,256 + ABIE53_004810 0.23 -3.3 1,017,256 + ABIE53_004810 0.23 +0.7 1,017,256 + ABIE53_004810 0.23 -1.6 1,017,256 + ABIE53_004810 0.23 -1.6 1,017,327 + ABIE53_004810 0.31 -2.0 1,017,328 - ABIE53_004810 0.31 -0.9 1,017,358 + ABIE53_004810 0.35 -0.3 1,017,358 + ABIE53_004810 0.35 -2.5 1,017,358 + ABIE53_004810 0.35 -1.1 1,017,358 + ABIE53_004810 0.35 +0.7 1,017,358 + ABIE53_004810 0.35 -0.8 1,017,358 + ABIE53_004810 0.35 -1.9 1,017,358 + ABIE53_004810 0.35 +2.0 1,017,358 + ABIE53_004810 0.35 -0.9 1,017,358 + ABIE53_004810 0.35 -0.3 1,017,359 - ABIE53_004810 0.35 -0.9 1,017,359 - ABIE53_004810 0.35 -1.5 1,017,359 - ABIE53_004810 0.35 -5.1 1,017,359 - ABIE53_004810 0.35 -2.6 1,017,359 - ABIE53_004810 0.35 +2.3 1,017,359 - ABIE53_004810 0.35 -1.5 1,017,359 - ABIE53_004810 0.35 -1.6 1,017,379 + ABIE53_004810 0.37 -1.8 1,017,380 - ABIE53_004810 0.37 -1.6 1,017,533 - ABIE53_004810 0.54 -1.3 1,017,563 - ABIE53_004810 0.57 +1.7 1,017,594 + ABIE53_004810 0.60 -3.4 1,017,594 + ABIE53_004810 0.60 -1.4 1,017,632 - ABIE53_004810 0.65 -1.3 1,017,656 + ABIE53_004810 0.67 -0.3 1,017,835 + ABIE53_004810 0.87 +3.5 1,017,836 - ABIE53_004810 0.87 +0.7 1,017,853 + ABIE53_004810 0.89 -2.4 1,017,854 - ABIE53_004810 0.89 -4.4 1,017,959 - -1.6 1,017,974 + -1.9 1,017,974 + -0.3 1,017,974 + -0.4 1,017,974 + -0.3 1,017,974 + -0.1 1,017,974 + +0.3 1,017,975 - -1.9 1,017,975 - +0.7 1,017,975 - +0.5 1,017,975 - -2.8
Or see this region's nucleotide sequence