Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004809

Experiment: Motility_chemotaxis, R2A; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_004807 and ABIE53_004808 overlap by 25 nucleotidesABIE53_004808 and ABIE53_004809 overlap by 4 nucleotidesABIE53_004809 and ABIE53_004810 are separated by 11 nucleotidesABIE53_004810 and ABIE53_004811 are separated by 41 nucleotides ABIE53_004807: ABIE53_004807 - tRNA pseudouridine38-40 synthase, at 1,014,250 to 1,015,062 _004807 ABIE53_004808: ABIE53_004808 - phosphoribosylanthranilate isomerase, at 1,015,038 to 1,015,781 _004808 ABIE53_004809: ABIE53_004809 - tryptophan synthase beta chain, at 1,015,778 to 1,017,031 _004809 ABIE53_004810: ABIE53_004810 - site-specific DNA-methyltransferase (adenine-specific), at 1,017,043 to 1,017,954 _004810 ABIE53_004811: ABIE53_004811 - tryptophan synthase alpha chain, at 1,017,996 to 1,018,808 _004811 Position (kb) 1015 1016 1017 1018Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1014.862 kb on + strand, within ABIE53_004807at 1014.863 kb on - strand, within ABIE53_004807at 1014.863 kb on - strand, within ABIE53_004807at 1014.863 kb on - strand, within ABIE53_004807at 1014.863 kb on - strand, within ABIE53_004807at 1014.863 kb on - strand, within ABIE53_004807at 1014.863 kb on - strand, within ABIE53_004807at 1014.863 kb on - strand, within ABIE53_004807at 1014.961 kb on + strand, within ABIE53_004807at 1014.961 kb on + strand, within ABIE53_004807at 1014.961 kb on + strand, within ABIE53_004807at 1014.979 kb on + strand, within ABIE53_004807at 1015.037 kb on + strandat 1015.037 kb on + strandat 1015.037 kb on + strandat 1015.583 kb on + strand, within ABIE53_004808at 1017.188 kb on + strand, within ABIE53_004810at 1017.189 kb on - strand, within ABIE53_004810at 1017.195 kb on + strand, within ABIE53_004810at 1017.195 kb on + strand, within ABIE53_004810at 1017.196 kb on - strand, within ABIE53_004810at 1017.196 kb on - strand, within ABIE53_004810at 1017.256 kb on + strand, within ABIE53_004810at 1017.256 kb on + strand, within ABIE53_004810at 1017.256 kb on + strand, within ABIE53_004810at 1017.256 kb on + strand, within ABIE53_004810at 1017.327 kb on + strand, within ABIE53_004810at 1017.328 kb on - strand, within ABIE53_004810at 1017.358 kb on + strand, within ABIE53_004810at 1017.358 kb on + strand, within ABIE53_004810at 1017.358 kb on + strand, within ABIE53_004810at 1017.358 kb on + strand, within ABIE53_004810at 1017.358 kb on + strand, within ABIE53_004810at 1017.358 kb on + strand, within ABIE53_004810at 1017.358 kb on + strand, within ABIE53_004810at 1017.358 kb on + strand, within ABIE53_004810at 1017.358 kb on + strand, within ABIE53_004810at 1017.359 kb on - strand, within ABIE53_004810at 1017.359 kb on - strand, within ABIE53_004810at 1017.359 kb on - strand, within ABIE53_004810at 1017.359 kb on - strand, within ABIE53_004810at 1017.359 kb on - strand, within ABIE53_004810at 1017.359 kb on - strand, within ABIE53_004810at 1017.359 kb on - strand, within ABIE53_004810at 1017.379 kb on + strand, within ABIE53_004810at 1017.380 kb on - strand, within ABIE53_004810at 1017.533 kb on - strand, within ABIE53_004810at 1017.563 kb on - strand, within ABIE53_004810at 1017.594 kb on + strand, within ABIE53_004810at 1017.594 kb on + strand, within ABIE53_004810at 1017.632 kb on - strand, within ABIE53_004810at 1017.656 kb on + strand, within ABIE53_004810at 1017.835 kb on + strand, within ABIE53_004810at 1017.836 kb on - strand, within ABIE53_004810at 1017.853 kb on + strand, within ABIE53_004810at 1017.854 kb on - strand, within ABIE53_004810at 1017.959 kb on - strandat 1017.974 kb on + strandat 1017.974 kb on + strandat 1017.974 kb on + strandat 1017.974 kb on + strandat 1017.974 kb on + strandat 1017.974 kb on + strandat 1017.975 kb on - strandat 1017.975 kb on - strandat 1017.975 kb on - strandat 1017.975 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_chemotaxis, R2A; outer cut
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1,014,862 + ABIE53_004807 0.75 -0.3
1,014,863 - ABIE53_004807 0.75 -0.9
1,014,863 - ABIE53_004807 0.75 -2.1
1,014,863 - ABIE53_004807 0.75 -0.3
1,014,863 - ABIE53_004807 0.75 +0.7
1,014,863 - ABIE53_004807 0.75 +0.4
1,014,863 - ABIE53_004807 0.75 -0.9
1,014,863 - ABIE53_004807 0.75 -3.1
1,014,961 + ABIE53_004807 0.87 -2.1
1,014,961 + ABIE53_004807 0.87 -4.6
1,014,961 + ABIE53_004807 0.87 -0.3
1,014,979 + ABIE53_004807 0.90 -0.8
1,015,037 + -0.6
1,015,037 + -0.3
1,015,037 + -0.1
1,015,583 + ABIE53_004808 0.73 -1.9
1,017,188 + ABIE53_004810 0.16 -0.9
1,017,189 - ABIE53_004810 0.16 -4.0
1,017,195 + ABIE53_004810 0.17 -2.1
1,017,195 + ABIE53_004810 0.17 +1.3
1,017,196 - ABIE53_004810 0.17 -0.3
1,017,196 - ABIE53_004810 0.17 +0.7
1,017,256 + ABIE53_004810 0.23 -3.3
1,017,256 + ABIE53_004810 0.23 +0.7
1,017,256 + ABIE53_004810 0.23 -1.6
1,017,256 + ABIE53_004810 0.23 -1.6
1,017,327 + ABIE53_004810 0.31 -2.0
1,017,328 - ABIE53_004810 0.31 -0.9
1,017,358 + ABIE53_004810 0.35 -0.3
1,017,358 + ABIE53_004810 0.35 -2.5
1,017,358 + ABIE53_004810 0.35 -1.1
1,017,358 + ABIE53_004810 0.35 +0.7
1,017,358 + ABIE53_004810 0.35 -0.8
1,017,358 + ABIE53_004810 0.35 -1.9
1,017,358 + ABIE53_004810 0.35 +2.0
1,017,358 + ABIE53_004810 0.35 -0.9
1,017,358 + ABIE53_004810 0.35 -0.3
1,017,359 - ABIE53_004810 0.35 -0.9
1,017,359 - ABIE53_004810 0.35 -1.5
1,017,359 - ABIE53_004810 0.35 -5.1
1,017,359 - ABIE53_004810 0.35 -2.6
1,017,359 - ABIE53_004810 0.35 +2.3
1,017,359 - ABIE53_004810 0.35 -1.5
1,017,359 - ABIE53_004810 0.35 -1.6
1,017,379 + ABIE53_004810 0.37 -1.8
1,017,380 - ABIE53_004810 0.37 -1.6
1,017,533 - ABIE53_004810 0.54 -1.3
1,017,563 - ABIE53_004810 0.57 +1.7
1,017,594 + ABIE53_004810 0.60 -3.4
1,017,594 + ABIE53_004810 0.60 -1.4
1,017,632 - ABIE53_004810 0.65 -1.3
1,017,656 + ABIE53_004810 0.67 -0.3
1,017,835 + ABIE53_004810 0.87 +3.5
1,017,836 - ABIE53_004810 0.87 +0.7
1,017,853 + ABIE53_004810 0.89 -2.4
1,017,854 - ABIE53_004810 0.89 -4.4
1,017,959 - -1.6
1,017,974 + -1.9
1,017,974 + -0.3
1,017,974 + -0.4
1,017,974 + -0.3
1,017,974 + -0.1
1,017,974 + +0.3
1,017,975 - -1.9
1,017,975 - +0.7
1,017,975 - +0.5
1,017,975 - -2.8

Or see this region's nucleotide sequence