Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0610

Experiment: MoLS4 with L-Histidine as nutrient 10mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU0608 and DVU0609 are separated by 155 nucleotidesDVU0609 and DVU0610 overlap by 4 nucleotidesDVU0610 and DVU0611 are separated by 24 nucleotidesDVU0611 and DVU0612 are separated by 15 nucleotides DVU0608: DVU0608 - methyl-accepting chemotaxis protein (TIGR), at 676,751 to 678,784 DVU0608 DVU0609: DVU0609 - lipoprotein, putative (TIGR), at 678,940 to 679,575 DVU0609 DVU0610: DVU0610 - conserved hypothetical protein (TIGR), at 679,572 to 680,492 DVU0610 DVU0611: DVU0611 - ABC transporter, ATP-binding protein (TIGR), at 680,517 to 681,344 DVU0611 DVU0612: DVU0612 - STAS domain protein (TIGR), at 681,360 to 682,565 DVU0612 Position (kb) 679 680 681Strain fitness (log2 ratio) -3 -2 -1 0 1at 678.602 kb on + strandat 678.612 kb on + strandat 678.624 kb on + strandat 678.695 kb on + strandat 678.703 kb on - strandat 678.821 kb on + strandat 678.992 kb on + strandat 679.024 kb on - strand, within DVU0609at 679.206 kb on - strand, within DVU0609at 679.384 kb on - strand, within DVU0609at 679.443 kb on + strand, within DVU0609at 679.491 kb on + strand, within DVU0609at 679.658 kb on - strandat 679.700 kb on + strand, within DVU0610at 679.717 kb on - strand, within DVU0610at 679.763 kb on - strand, within DVU0610at 679.763 kb on - strand, within DVU0610at 679.782 kb on - strand, within DVU0610at 679.782 kb on - strand, within DVU0610at 679.904 kb on - strand, within DVU0610at 679.956 kb on - strand, within DVU0610at 679.981 kb on + strand, within DVU0610at 679.981 kb on + strand, within DVU0610at 679.981 kb on + strand, within DVU0610at 679.981 kb on + strand, within DVU0610at 679.989 kb on - strand, within DVU0610at 679.989 kb on - strand, within DVU0610at 679.993 kb on + strand, within DVU0610at 680.091 kb on + strand, within DVU0610at 680.099 kb on - strand, within DVU0610at 680.244 kb on + strand, within DVU0610at 680.377 kb on - strand, within DVU0610at 680.537 kb on + strandat 680.553 kb on + strandat 680.553 kb on + strandat 680.553 kb on + strandat 680.561 kb on - strandat 680.561 kb on - strandat 680.604 kb on - strand, within DVU0611at 680.614 kb on + strand, within DVU0611at 680.622 kb on - strand, within DVU0611at 680.622 kb on - strand, within DVU0611at 680.665 kb on - strand, within DVU0611at 680.665 kb on - strand, within DVU0611at 680.665 kb on - strand, within DVU0611at 680.751 kb on - strand, within DVU0611at 680.756 kb on - strand, within DVU0611at 680.804 kb on + strand, within DVU0611at 680.873 kb on - strand, within DVU0611at 681.124 kb on - strand, within DVU0611at 681.127 kb on + strand, within DVU0611at 681.127 kb on + strand, within DVU0611at 681.145 kb on - strand, within DVU0611at 681.145 kb on - strand, within DVU0611at 681.145 kb on - strand, within DVU0611at 681.145 kb on - strand, within DVU0611at 681.158 kb on - strand, within DVU0611at 681.195 kb on - strand, within DVU0611at 681.229 kb on + strand, within DVU0611at 681.237 kb on - strand, within DVU0611at 681.269 kb on - strandat 681.330 kb on + strandat 681.350 kb on + strandat 681.383 kb on - strandat 681.385 kb on + strandat 681.461 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Histidine as nutrient 10mM
remove
678,602 + +1.0
678,612 + +0.0
678,624 + -0.1
678,695 + +1.3
678,703 - -0.7
678,821 + +0.5
678,992 + -0.2
679,024 - DVU0609 0.13 -0.3
679,206 - DVU0609 0.42 +0.1
679,384 - DVU0609 0.70 -1.0
679,443 + DVU0609 0.79 -2.2
679,491 + DVU0609 0.87 -0.9
679,658 - -1.8
679,700 + DVU0610 0.14 +0.1
679,717 - DVU0610 0.16 +0.1
679,763 - DVU0610 0.21 +0.3
679,763 - DVU0610 0.21 -1.1
679,782 - DVU0610 0.23 -1.1
679,782 - DVU0610 0.23 -2.0
679,904 - DVU0610 0.36 +0.3
679,956 - DVU0610 0.42 +0.4
679,981 + DVU0610 0.44 -1.3
679,981 + DVU0610 0.44 -2.1
679,981 + DVU0610 0.44 -0.8
679,981 + DVU0610 0.44 +0.1
679,989 - DVU0610 0.45 -2.2
679,989 - DVU0610 0.45 -0.6
679,993 + DVU0610 0.46 -1.4
680,091 + DVU0610 0.56 -3.1
680,099 - DVU0610 0.57 -1.8
680,244 + DVU0610 0.73 +0.2
680,377 - DVU0610 0.87 -0.2
680,537 + +0.2
680,553 + -0.3
680,553 + -0.3
680,553 + -0.6
680,561 - +1.0
680,561 - +0.0
680,604 - DVU0611 0.11 -0.3
680,614 + DVU0611 0.12 -0.6
680,622 - DVU0611 0.13 -0.2
680,622 - DVU0611 0.13 +0.3
680,665 - DVU0611 0.18 -2.7
680,665 - DVU0611 0.18 -2.1
680,665 - DVU0611 0.18 -1.6
680,751 - DVU0611 0.28 -0.2
680,756 - DVU0611 0.29 +0.0
680,804 + DVU0611 0.35 +0.2
680,873 - DVU0611 0.43 -0.2
681,124 - DVU0611 0.73 -0.3
681,127 + DVU0611 0.74 +0.3
681,127 + DVU0611 0.74 -0.3
681,145 - DVU0611 0.76 -0.2
681,145 - DVU0611 0.76 -0.1
681,145 - DVU0611 0.76 +0.1
681,145 - DVU0611 0.76 +0.1
681,158 - DVU0611 0.77 +0.1
681,195 - DVU0611 0.82 +0.8
681,229 + DVU0611 0.86 -1.0
681,237 - DVU0611 0.87 -0.1
681,269 - -0.4
681,330 + -0.0
681,350 + -1.4
681,383 - +0.9
681,385 + +0.2
681,461 + +0.3

Or see this region's nucleotide sequence