Experiment: MoLS4 with L-Histidine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0589 and DVU0590 are separated by 483 nucleotides DVU0590 and mcpD are separated by 183 nucleotides mcpD and cheW-1 are separated by 45 nucleotides cheW-1 and LysE are separated by 359 nucleotides
DVU0589: DVU0589 - molybdopterin-guanine dinucleotide biosynthesis protein B, putative (TIGR), at 657,590 to 658,330
DVU0589
DVU0590: DVU0590 - hypothetical protein (TIGR), at 658,814 to 659,122
DVU0590
DVU0591: mcpD - methyl-accepting chemotaxis protein (TIGR), at 659,306 to 661,264
mcpD
DVU0592: cheW-1 - chemotaxis protein CheW (TIGR), at 661,310 to 661,831
cheW-1
DVU0593: LysE - L-lysine exporter, putative (TIGR), at 662,191 to 662,811
LysE
Position (kb) 659
660
661
662 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 658.366 kb on - strand at 658.366 kb on - strand at 658.435 kb on - strand at 658.691 kb on + strand at 658.706 kb on + strand at 658.706 kb on + strand at 658.738 kb on - strand at 658.808 kb on + strand at 658.863 kb on + strand, within DVU0590 at 658.912 kb on - strand, within DVU0590 at 658.912 kb on - strand, within DVU0590 at 658.949 kb on + strand, within DVU0590 at 659.098 kb on + strand at 659.240 kb on + strand at 659.350 kb on - strand at 659.353 kb on - strand at 659.445 kb on - strand at 659.469 kb on + strand at 659.549 kb on + strand, within mcpD at 659.557 kb on + strand, within mcpD at 659.565 kb on - strand, within mcpD at 659.572 kb on + strand, within mcpD at 659.590 kb on - strand, within mcpD at 659.684 kb on - strand, within mcpD at 659.691 kb on - strand, within mcpD at 659.757 kb on - strand, within mcpD at 659.783 kb on - strand, within mcpD at 659.836 kb on + strand, within mcpD at 659.844 kb on - strand, within mcpD at 659.870 kb on + strand, within mcpD at 659.870 kb on + strand, within mcpD at 659.937 kb on - strand, within mcpD at 659.937 kb on - strand, within mcpD at 659.956 kb on + strand, within mcpD at 659.956 kb on + strand, within mcpD at 659.964 kb on - strand, within mcpD at 659.973 kb on + strand, within mcpD at 659.995 kb on + strand, within mcpD at 660.003 kb on - strand, within mcpD at 660.014 kb on + strand, within mcpD at 660.055 kb on - strand, within mcpD at 660.103 kb on - strand, within mcpD at 660.149 kb on - strand, within mcpD at 660.158 kb on + strand, within mcpD at 660.227 kb on + strand, within mcpD at 660.259 kb on + strand, within mcpD at 660.259 kb on + strand, within mcpD at 660.259 kb on + strand, within mcpD at 660.267 kb on - strand, within mcpD at 660.267 kb on - strand, within mcpD at 660.363 kb on + strand, within mcpD at 660.417 kb on - strand, within mcpD at 660.448 kb on + strand, within mcpD at 660.501 kb on + strand, within mcpD at 660.625 kb on + strand, within mcpD at 660.727 kb on + strand, within mcpD at 660.844 kb on + strand, within mcpD at 660.958 kb on - strand, within mcpD at 660.984 kb on - strand, within mcpD at 661.052 kb on + strand, within mcpD at 661.063 kb on + strand, within mcpD at 661.087 kb on - strand at 661.098 kb on + strand at 661.140 kb on - strand at 661.140 kb on - strand at 661.160 kb on - strand at 661.177 kb on + strand at 661.185 kb on - strand at 661.235 kb on + strand at 661.258 kb on + strand at 661.258 kb on + strand at 661.258 kb on + strand at 661.258 kb on + strand at 661.266 kb on - strand at 661.266 kb on - strand at 661.278 kb on + strand at 661.283 kb on + strand at 661.327 kb on + strand at 661.343 kb on - strand at 661.343 kb on - strand at 661.355 kb on - strand at 661.364 kb on - strand, within cheW-1 at 661.411 kb on - strand, within cheW-1 at 661.433 kb on - strand, within cheW-1 at 661.438 kb on - strand, within cheW-1 at 661.461 kb on + strand, within cheW-1 at 661.475 kb on + strand, within cheW-1 at 661.511 kb on + strand, within cheW-1 at 661.704 kb on + strand, within cheW-1 at 661.750 kb on + strand, within cheW-1 at 661.750 kb on + strand, within cheW-1 at 661.901 kb on - strand at 661.912 kb on - strand at 661.961 kb on + strand at 661.980 kb on + strand at 662.010 kb on + strand at 662.079 kb on + strand at 662.079 kb on + strand at 662.079 kb on + strand at 662.079 kb on + strand at 662.079 kb on + strand at 662.087 kb on - strand at 662.087 kb on - strand at 662.241 kb on + strand at 662.241 kb on + strand at 662.241 kb on - strand at 662.251 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Histidine as nutrient 10mM remove 658,366 - -1.7 658,366 - -0.6 658,435 - -1.3 658,691 + -2.7 658,706 + -1.4 658,706 + -0.1 658,738 - -2.9 658,808 + -1.4 658,863 + DVU0590 0.16 -1.8 658,912 - DVU0590 0.32 -2.8 658,912 - DVU0590 0.32 -0.1 658,949 + DVU0590 0.44 -0.5 659,098 + -1.0 659,240 + -1.4 659,350 - +0.6 659,353 - +0.2 659,445 - -0.2 659,469 + +0.5 659,549 + mcpD DVU0591 0.12 +0.1 659,557 + mcpD DVU0591 0.13 -0.0 659,565 - mcpD DVU0591 0.13 -0.0 659,572 + mcpD DVU0591 0.14 -0.1 659,590 - mcpD DVU0591 0.14 +0.0 659,684 - mcpD DVU0591 0.19 -2.3 659,691 - mcpD DVU0591 0.20 +0.1 659,757 - mcpD DVU0591 0.23 +0.6 659,783 - mcpD DVU0591 0.24 -1.7 659,836 + mcpD DVU0591 0.27 -1.9 659,844 - mcpD DVU0591 0.27 +0.0 659,870 + mcpD DVU0591 0.29 +0.1 659,870 + mcpD DVU0591 0.29 +0.6 659,937 - mcpD DVU0591 0.32 +0.1 659,937 - mcpD DVU0591 0.32 +0.2 659,956 + mcpD DVU0591 0.33 +0.0 659,956 + mcpD DVU0591 0.33 +1.2 659,964 - mcpD DVU0591 0.34 +0.2 659,973 + mcpD DVU0591 0.34 +0.0 659,995 + mcpD DVU0591 0.35 +0.4 660,003 - mcpD DVU0591 0.36 +0.3 660,014 + mcpD DVU0591 0.36 +1.2 660,055 - mcpD DVU0591 0.38 -0.4 660,103 - mcpD DVU0591 0.41 +1.4 660,149 - mcpD DVU0591 0.43 -1.5 660,158 + mcpD DVU0591 0.43 -0.9 660,227 + mcpD DVU0591 0.47 +0.3 660,259 + mcpD DVU0591 0.49 +0.7 660,259 + mcpD DVU0591 0.49 +0.2 660,259 + mcpD DVU0591 0.49 +0.1 660,267 - mcpD DVU0591 0.49 -2.1 660,267 - mcpD DVU0591 0.49 -1.6 660,363 + mcpD DVU0591 0.54 -0.4 660,417 - mcpD DVU0591 0.57 -0.6 660,448 + mcpD DVU0591 0.58 -0.1 660,501 + mcpD DVU0591 0.61 -0.9 660,625 + mcpD DVU0591 0.67 +0.6 660,727 + mcpD DVU0591 0.73 +0.1 660,844 + mcpD DVU0591 0.79 +0.1 660,958 - mcpD DVU0591 0.84 +0.1 660,984 - mcpD DVU0591 0.86 +0.2 661,052 + mcpD DVU0591 0.89 -1.6 661,063 + mcpD DVU0591 0.90 -1.3 661,087 - -2.1 661,098 + +0.4 661,140 - -0.1 661,140 - +1.9 661,160 - -1.9 661,177 + -0.4 661,185 - -0.7 661,235 + -0.0 661,258 + -2.2 661,258 + -0.3 661,258 + -0.5 661,258 + -0.2 661,266 - -2.4 661,266 - -0.5 661,278 + +0.3 661,283 + +0.2 661,327 + -2.0 661,343 - +0.3 661,343 - -0.1 661,355 - -1.1 661,364 - cheW-1 DVU0592 0.10 +1.4 661,411 - cheW-1 DVU0592 0.19 -1.4 661,433 - cheW-1 DVU0592 0.24 -1.2 661,438 - cheW-1 DVU0592 0.25 -0.6 661,461 + cheW-1 DVU0592 0.29 -1.5 661,475 + cheW-1 DVU0592 0.32 +0.0 661,511 + cheW-1 DVU0592 0.39 +0.1 661,704 + cheW-1 DVU0592 0.75 +0.9 661,750 + cheW-1 DVU0592 0.84 +0.0 661,750 + cheW-1 DVU0592 0.84 +0.4 661,901 - +0.9 661,912 - +1.2 661,961 + -0.1 661,980 + +1.3 662,010 + +0.4 662,079 + +1.3 662,079 + -1.1 662,079 + -0.6 662,079 + -2.6 662,079 + -0.6 662,087 - -1.3 662,087 - -0.3 662,241 + -0.6 662,241 + -1.0 662,241 - -0.7 662,251 + +1.2
Or see this region's nucleotide sequence