Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0087

Experiment: MoLS4 with L-Histidine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrrf and DVU0087 are separated by 915 nucleotidesDVU0087 and DVU0088 overlap by 4 nucleotides Dv5SA: rrf - 5S ribosomal RNA (VIMSS-AUTO), at 110,870 to 110,986 rrf DVU0087: DVU0087 - conserved domain protein (TIGR), at 111,902 to 112,396 DVU0087 DVU0088: DVU0088 - Sodium/pantothenate symporter (TIGR), at 112,393 to 113,880 DVU0088 Position (kb) 111 112 113Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 111.502 kb on + strandat 111.508 kb on - strandat 111.508 kb on - strandat 111.510 kb on - strandat 111.513 kb on + strandat 111.632 kb on + strandat 111.687 kb on + strandat 111.729 kb on + strandat 111.803 kb on + strandat 111.819 kb on + strandat 111.860 kb on + strandat 111.938 kb on - strandat 111.952 kb on - strand, within DVU0087at 111.965 kb on + strand, within DVU0087at 112.013 kb on + strand, within DVU0087at 112.146 kb on - strand, within DVU0087at 112.241 kb on - strand, within DVU0087at 112.356 kb on + strandat 112.404 kb on + strandat 112.412 kb on - strandat 112.451 kb on + strandat 112.513 kb on + strandat 112.515 kb on + strandat 112.515 kb on + strandat 112.744 kb on - strand, within DVU0088at 112.857 kb on + strand, within DVU0088at 112.964 kb on + strand, within DVU0088at 113.046 kb on + strand, within DVU0088at 113.058 kb on + strand, within DVU0088at 113.162 kb on - strand, within DVU0088at 113.177 kb on - strand, within DVU0088at 113.177 kb on - strand, within DVU0088at 113.285 kb on + strand, within DVU0088at 113.345 kb on + strand, within DVU0088at 113.353 kb on - strand, within DVU0088

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Histidine as nutrient 10mM
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111,502 + +0.7
111,508 - +0.0
111,508 - -1.1
111,510 - -0.4
111,513 + -1.4
111,632 + -1.4
111,687 + -2.3
111,729 + +0.2
111,803 + +0.0
111,819 + +1.0
111,860 + -2.8
111,938 - -0.4
111,952 - DVU0087 0.10 -0.9
111,965 + DVU0087 0.13 -1.4
112,013 + DVU0087 0.22 -3.0
112,146 - DVU0087 0.49 -5.1
112,241 - DVU0087 0.68 -1.1
112,356 + -0.4
112,404 + -0.7
112,412 - -1.8
112,451 + -1.7
112,513 + -1.2
112,515 + -1.9
112,515 + +0.0
112,744 - DVU0088 0.24 -0.7
112,857 + DVU0088 0.31 -0.6
112,964 + DVU0088 0.38 -2.2
113,046 + DVU0088 0.44 -1.5
113,058 + DVU0088 0.45 -0.3
113,162 - DVU0088 0.52 -0.3
113,177 - DVU0088 0.53 -1.1
113,177 - DVU0088 0.53 +1.2
113,285 + DVU0088 0.60 -2.7
113,345 + DVU0088 0.64 -1.8
113,353 - DVU0088 0.65 -1.1

Or see this region's nucleotide sequence