Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2244

Experiment: MoLS4 with L-Histidine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntglgB and glgA overlap by 4 nucleotidesglgA and DVU2245 are separated by 28 nucleotides DVU2243: glgB - 1,4-alpha-glucan branching enzyme (TIGR), at 2,336,760 to 2,338,682 glgB DVU2244: glgA - glycogen synthase (TIGR), at 2,338,679 to 2,340,148 glgA DVU2245: DVU2245 - mutT/nudix family protein (TIGR), at 2,340,177 to 2,340,593 DVU2245 Position (kb) 2338 2339 2340 2341Strain fitness (log2 ratio) -3 -2 -1 0 1at 2337.689 kb on - strand, within glgBat 2337.709 kb on + strand, within glgBat 2337.717 kb on - strand, within glgBat 2337.741 kb on - strand, within glgBat 2337.743 kb on + strand, within glgBat 2337.784 kb on - strand, within glgBat 2337.865 kb on - strand, within glgBat 2337.905 kb on + strand, within glgBat 2337.938 kb on - strand, within glgBat 2338.032 kb on + strand, within glgBat 2338.051 kb on + strand, within glgBat 2338.059 kb on - strand, within glgBat 2338.090 kb on + strand, within glgBat 2338.107 kb on + strand, within glgBat 2338.115 kb on - strand, within glgBat 2338.120 kb on - strand, within glgBat 2338.301 kb on - strand, within glgBat 2338.307 kb on + strand, within glgBat 2338.548 kb on + strandat 2338.597 kb on + strandat 2338.611 kb on + strandat 2338.666 kb on - strandat 2338.713 kb on - strandat 2338.755 kb on + strandat 2338.760 kb on + strandat 2338.812 kb on + strandat 2338.867 kb on + strand, within glgAat 2338.922 kb on - strand, within glgAat 2338.973 kb on + strand, within glgAat 2338.973 kb on + strand, within glgAat 2338.978 kb on + strand, within glgAat 2339.061 kb on - strand, within glgAat 2339.070 kb on - strand, within glgAat 2339.104 kb on + strand, within glgAat 2339.104 kb on + strand, within glgAat 2339.104 kb on + strand, within glgAat 2339.104 kb on + strand, within glgAat 2339.112 kb on - strand, within glgAat 2339.112 kb on - strand, within glgAat 2339.170 kb on + strand, within glgAat 2339.266 kb on + strand, within glgAat 2339.274 kb on - strand, within glgAat 2339.295 kb on + strand, within glgAat 2339.321 kb on + strand, within glgAat 2339.396 kb on - strand, within glgAat 2339.531 kb on - strand, within glgAat 2339.533 kb on + strand, within glgAat 2339.541 kb on - strand, within glgAat 2339.559 kb on - strand, within glgAat 2339.576 kb on - strand, within glgAat 2339.576 kb on - strand, within glgAat 2339.644 kb on - strand, within glgAat 2339.651 kb on - strand, within glgAat 2339.746 kb on + strand, within glgAat 2339.748 kb on + strand, within glgAat 2339.754 kb on - strand, within glgAat 2339.756 kb on - strand, within glgAat 2339.766 kb on - strand, within glgAat 2339.795 kb on + strand, within glgAat 2340.040 kb on + strandat 2340.058 kb on - strandat 2340.058 kb on - strandat 2340.077 kb on - strandat 2340.377 kb on + strand, within DVU2245at 2340.409 kb on - strand, within DVU2245at 2340.413 kb on + strand, within DVU2245at 2340.422 kb on - strand, within DVU2245at 2340.622 kb on + strandat 2340.630 kb on - strandat 2340.638 kb on + strandat 2340.670 kb on - strandat 2340.683 kb on + strandat 2340.726 kb on - strandat 2340.744 kb on + strandat 2340.744 kb on + strandat 2340.752 kb on - strandat 2340.786 kb on + strandat 2340.828 kb on + strandat 2340.839 kb on - strandat 2340.851 kb on + strandat 2340.887 kb on - strandat 2340.939 kb on - strandat 2341.003 kb on - strandat 2341.024 kb on + strandat 2341.044 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Histidine as nutrient 10mM
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2,337,689 - glgB DVU2243 0.48 -1.2
2,337,709 + glgB DVU2243 0.49 -0.4
2,337,717 - glgB DVU2243 0.50 -0.5
2,337,741 - glgB DVU2243 0.51 +0.4
2,337,743 + glgB DVU2243 0.51 -1.2
2,337,784 - glgB DVU2243 0.53 -0.0
2,337,865 - glgB DVU2243 0.57 -0.1
2,337,905 + glgB DVU2243 0.60 -1.7
2,337,938 - glgB DVU2243 0.61 +0.9
2,338,032 + glgB DVU2243 0.66 -0.8
2,338,051 + glgB DVU2243 0.67 -1.1
2,338,059 - glgB DVU2243 0.68 -2.3
2,338,090 + glgB DVU2243 0.69 +0.2
2,338,107 + glgB DVU2243 0.70 +0.2
2,338,115 - glgB DVU2243 0.70 -2.3
2,338,120 - glgB DVU2243 0.71 -2.1
2,338,301 - glgB DVU2243 0.80 -0.4
2,338,307 + glgB DVU2243 0.80 -2.0
2,338,548 + -0.3
2,338,597 + -0.2
2,338,611 + -0.8
2,338,666 - -1.2
2,338,713 - -2.1
2,338,755 + -0.6
2,338,760 + -1.2
2,338,812 + -0.7
2,338,867 + glgA DVU2244 0.13 -0.2
2,338,922 - glgA DVU2244 0.17 -1.9
2,338,973 + glgA DVU2244 0.20 +0.3
2,338,973 + glgA DVU2244 0.20 -1.5
2,338,978 + glgA DVU2244 0.20 -1.5
2,339,061 - glgA DVU2244 0.26 -1.5
2,339,070 - glgA DVU2244 0.27 +0.2
2,339,104 + glgA DVU2244 0.29 -0.4
2,339,104 + glgA DVU2244 0.29 -2.1
2,339,104 + glgA DVU2244 0.29 -0.4
2,339,104 + glgA DVU2244 0.29 +0.5
2,339,112 - glgA DVU2244 0.29 -0.7
2,339,112 - glgA DVU2244 0.29 -0.1
2,339,170 + glgA DVU2244 0.33 -0.5
2,339,266 + glgA DVU2244 0.40 -0.5
2,339,274 - glgA DVU2244 0.40 -0.9
2,339,295 + glgA DVU2244 0.42 +0.1
2,339,321 + glgA DVU2244 0.44 -1.3
2,339,396 - glgA DVU2244 0.49 -2.7
2,339,531 - glgA DVU2244 0.58 -1.3
2,339,533 + glgA DVU2244 0.58 -0.8
2,339,541 - glgA DVU2244 0.59 -0.7
2,339,559 - glgA DVU2244 0.60 -0.3
2,339,576 - glgA DVU2244 0.61 +0.1
2,339,576 - glgA DVU2244 0.61 +0.7
2,339,644 - glgA DVU2244 0.66 -0.2
2,339,651 - glgA DVU2244 0.66 +0.3
2,339,746 + glgA DVU2244 0.73 +0.1
2,339,748 + glgA DVU2244 0.73 +0.5
2,339,754 - glgA DVU2244 0.73 -0.2
2,339,756 - glgA DVU2244 0.73 -0.2
2,339,766 - glgA DVU2244 0.74 -2.8
2,339,795 + glgA DVU2244 0.76 +0.0
2,340,040 + -0.8
2,340,058 - +0.8
2,340,058 - -0.2
2,340,077 - -2.1
2,340,377 + DVU2245 0.48 -2.0
2,340,409 - DVU2245 0.56 -0.9
2,340,413 + DVU2245 0.57 -1.9
2,340,422 - DVU2245 0.59 +0.2
2,340,622 + -0.9
2,340,630 - -0.2
2,340,638 + +0.7
2,340,670 - -1.1
2,340,683 + -2.2
2,340,726 - +0.2
2,340,744 + -0.8
2,340,744 + +0.1
2,340,752 - -1.6
2,340,786 + +1.3
2,340,828 + +1.5
2,340,839 - +0.2
2,340,851 + -0.2
2,340,887 - +0.9
2,340,939 - +0.7
2,341,003 - +0.1
2,341,024 + +0.4
2,341,044 + +0.0

Or see this region's nucleotide sequence