Experiment: MoLS4 with L-Histidine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0765 and DVU0766 are separated by 198 nucleotides DVU0766 and DVU0767 are separated by 120 nucleotides DVU0767 and murI are separated by 88 nucleotides murI and DVU0769 are separated by 1 nucleotides
DVU0765: DVU0765 - hydroxypyruvate reductase, putative (TIGR), at 855,564 to 856,928
DVU0765
DVU0766: DVU0766 - transporter, putative (TIGR), at 857,127 to 857,657
DVU0766
DVU0767: DVU0767 - aminotransferase, class V (TIGR), at 857,778 to 858,884
DVU0767
DVU0768: murI - glutamate racemase (TIGR), at 858,973 to 859,821
murI
DVU0769: DVU0769 - pyridoxal kinase, putative (TIGR), at 859,823 to 860,701
DVU0769
Position (kb) 857
858
859 Strain fitness (log2 ratio) -2
-1
0
1
2 at 856.779 kb on + strand, within DVU0765 at 856.787 kb on - strand, within DVU0765 at 856.829 kb on - strand at 856.863 kb on - strand at 856.987 kb on - strand at 857.010 kb on + strand at 857.012 kb on - strand at 857.056 kb on - strand at 857.056 kb on - strand at 857.056 kb on - strand at 857.083 kb on + strand at 857.143 kb on + strand at 857.266 kb on - strand, within DVU0766 at 857.310 kb on + strand, within DVU0766 at 857.317 kb on - strand, within DVU0766 at 857.393 kb on + strand, within DVU0766 at 857.393 kb on + strand, within DVU0766 at 857.393 kb on + strand, within DVU0766 at 857.400 kb on + strand, within DVU0766 at 857.401 kb on - strand, within DVU0766 at 857.445 kb on - strand, within DVU0766 at 857.450 kb on - strand, within DVU0766 at 857.520 kb on - strand, within DVU0766 at 857.534 kb on - strand, within DVU0766 at 857.556 kb on - strand, within DVU0766 at 857.596 kb on - strand, within DVU0766 at 857.601 kb on - strand, within DVU0766 at 857.606 kb on - strand at 857.621 kb on + strand at 857.637 kb on + strand at 857.669 kb on - strand at 857.690 kb on - strand at 857.829 kb on - strand at 857.966 kb on + strand, within DVU0767 at 857.967 kb on + strand, within DVU0767 at 857.974 kb on - strand, within DVU0767 at 858.095 kb on - strand, within DVU0767 at 858.274 kb on - strand, within DVU0767 at 858.376 kb on + strand, within DVU0767 at 858.384 kb on - strand, within DVU0767 at 858.431 kb on + strand, within DVU0767 at 858.476 kb on + strand, within DVU0767 at 858.481 kb on + strand, within DVU0767 at 858.492 kb on + strand, within DVU0767 at 858.494 kb on - strand, within DVU0767 at 858.521 kb on - strand, within DVU0767 at 858.548 kb on - strand, within DVU0767 at 858.562 kb on + strand, within DVU0767 at 858.570 kb on - strand, within DVU0767 at 858.630 kb on - strand, within DVU0767 at 858.674 kb on - strand, within DVU0767 at 858.700 kb on + strand, within DVU0767 at 858.711 kb on - strand, within DVU0767 at 858.802 kb on - strand at 858.842 kb on + strand at 858.850 kb on - strand at 858.871 kb on + strand at 858.871 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Histidine as nutrient 10mM remove 856,779 + DVU0765 0.89 -0.4 856,787 - DVU0765 0.90 -0.6 856,829 - -0.6 856,863 - +0.1 856,987 - +0.1 857,010 + -0.1 857,012 - -2.0 857,056 - -0.2 857,056 - +0.3 857,056 - -0.1 857,083 + +1.0 857,143 + -0.7 857,266 - DVU0766 0.26 -0.8 857,310 + DVU0766 0.34 +0.1 857,317 - DVU0766 0.36 -1.5 857,393 + DVU0766 0.50 -0.5 857,393 + DVU0766 0.50 -1.1 857,393 + DVU0766 0.50 -1.2 857,400 + DVU0766 0.51 -0.1 857,401 - DVU0766 0.52 +0.2 857,445 - DVU0766 0.60 -0.5 857,450 - DVU0766 0.61 -0.4 857,520 - DVU0766 0.74 -2.4 857,534 - DVU0766 0.77 +0.0 857,556 - DVU0766 0.81 +0.1 857,596 - DVU0766 0.88 +0.0 857,601 - DVU0766 0.89 -0.3 857,606 - +0.3 857,621 + -1.7 857,637 + +0.2 857,669 - -2.2 857,690 - -2.1 857,829 - +0.9 857,966 + DVU0767 0.17 +0.3 857,967 + DVU0767 0.17 +0.1 857,974 - DVU0767 0.18 +0.1 858,095 - DVU0767 0.29 +0.7 858,274 - DVU0767 0.45 +0.6 858,376 + DVU0767 0.54 +0.1 858,384 - DVU0767 0.55 +0.3 858,431 + DVU0767 0.59 +1.8 858,476 + DVU0767 0.63 -0.3 858,481 + DVU0767 0.64 -1.6 858,492 + DVU0767 0.64 -0.0 858,494 - DVU0767 0.65 +0.2 858,521 - DVU0767 0.67 -1.6 858,548 - DVU0767 0.70 -0.2 858,562 + DVU0767 0.71 +1.7 858,570 - DVU0767 0.72 +1.4 858,630 - DVU0767 0.77 -0.2 858,674 - DVU0767 0.81 -0.6 858,700 + DVU0767 0.83 -0.5 858,711 - DVU0767 0.84 +0.0 858,802 - -0.5 858,842 + -0.3 858,850 - -0.7 858,871 + +0.0 858,871 + -0.4
Or see this region's nucleotide sequence