Experiment: MoLS4 with L-Histidine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0741 and DVU0742 are separated by 7 nucleotides DVU0742 and DVU0743 are separated by 4 nucleotides DVU0743 and DVU0744 overlap by 1 nucleotides
DVU0741: DVU0741 - hypothetical protein (TIGR), at 829,146 to 829,622
DVU0741
DVU0742: DVU0742 - hypothetical protein (TIGR), at 829,630 to 830,466
DVU0742
DVU0743: DVU0743 - sensory box histidine kinase (TIGR), at 830,471 to 832,468
DVU0743
DVU0744: DVU0744 - sigma-54 dependent transcriptional regulator/response regulator (TIGR), at 832,468 to 834,177
DVU0744
Position (kb) 830
831
832
833 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 829.512 kb on - strand, within DVU0741 at 829.527 kb on + strand, within DVU0741 at 829.636 kb on - strand at 829.710 kb on + strand at 829.737 kb on + strand, within DVU0742 at 829.747 kb on + strand, within DVU0742 at 829.755 kb on - strand, within DVU0742 at 829.755 kb on - strand, within DVU0742 at 829.819 kb on + strand, within DVU0742 at 829.897 kb on - strand, within DVU0742 at 829.907 kb on - strand, within DVU0742 at 829.911 kb on + strand, within DVU0742 at 829.951 kb on + strand, within DVU0742 at 829.992 kb on + strand, within DVU0742 at 830.000 kb on - strand, within DVU0742 at 830.000 kb on - strand, within DVU0742 at 830.001 kb on - strand, within DVU0742 at 830.040 kb on - strand, within DVU0742 at 830.086 kb on + strand, within DVU0742 at 830.149 kb on - strand, within DVU0742 at 830.226 kb on + strand, within DVU0742 at 830.252 kb on - strand, within DVU0742 at 830.252 kb on - strand, within DVU0742 at 830.290 kb on + strand, within DVU0742 at 830.298 kb on - strand, within DVU0742 at 830.300 kb on + strand, within DVU0742 at 830.344 kb on - strand, within DVU0742 at 830.363 kb on + strand, within DVU0742 at 830.405 kb on - strand at 830.565 kb on + strand at 830.572 kb on - strand at 830.591 kb on - strand at 830.715 kb on + strand, within DVU0743 at 830.725 kb on + strand, within DVU0743 at 830.725 kb on + strand, within DVU0743 at 830.839 kb on - strand, within DVU0743 at 830.854 kb on - strand, within DVU0743 at 830.929 kb on + strand, within DVU0743 at 830.958 kb on - strand, within DVU0743 at 830.958 kb on - strand, within DVU0743 at 831.050 kb on + strand, within DVU0743 at 831.069 kb on - strand, within DVU0743 at 831.077 kb on - strand, within DVU0743 at 831.227 kb on - strand, within DVU0743 at 831.249 kb on + strand, within DVU0743 at 831.282 kb on + strand, within DVU0743 at 831.442 kb on + strand, within DVU0743 at 831.457 kb on + strand, within DVU0743 at 831.598 kb on - strand, within DVU0743 at 831.641 kb on - strand, within DVU0743 at 831.656 kb on - strand, within DVU0743 at 831.727 kb on + strand, within DVU0743 at 831.815 kb on + strand, within DVU0743 at 831.858 kb on + strand, within DVU0743 at 831.937 kb on - strand, within DVU0743 at 831.937 kb on - strand, within DVU0743 at 831.965 kb on + strand, within DVU0743 at 831.973 kb on - strand, within DVU0743 at 831.974 kb on - strand, within DVU0743 at 832.007 kb on + strand, within DVU0743 at 832.030 kb on - strand, within DVU0743 at 832.030 kb on - strand, within DVU0743 at 832.065 kb on - strand, within DVU0743 at 832.065 kb on - strand, within DVU0743 at 832.157 kb on + strand, within DVU0743 at 832.162 kb on + strand, within DVU0743 at 832.162 kb on + strand, within DVU0743 at 832.167 kb on + strand, within DVU0743 at 832.167 kb on + strand, within DVU0743 at 832.175 kb on - strand, within DVU0743 at 832.298 kb on - strand at 832.347 kb on - strand at 832.348 kb on + strand at 832.390 kb on - strand at 832.390 kb on - strand at 832.390 kb on - strand at 832.400 kb on - strand at 832.438 kb on + strand at 832.444 kb on - strand at 832.634 kb on + strand at 832.651 kb on + strand, within DVU0744 at 832.687 kb on - strand, within DVU0744 at 832.696 kb on - strand, within DVU0744 at 832.767 kb on + strand, within DVU0744 at 832.789 kb on + strand, within DVU0744 at 832.832 kb on - strand, within DVU0744 at 832.890 kb on - strand, within DVU0744 at 832.999 kb on + strand, within DVU0744 at 833.166 kb on - strand, within DVU0744 at 833.269 kb on + strand, within DVU0744 at 833.277 kb on + strand, within DVU0744 at 833.340 kb on + strand, within DVU0744 at 833.404 kb on - strand, within DVU0744 at 833.411 kb on + strand, within DVU0744 at 833.419 kb on - strand, within DVU0744
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Histidine as nutrient 10mM remove 829,512 - DVU0741 0.77 -0.8 829,527 + DVU0741 0.80 -0.4 829,636 - +1.7 829,710 + -1.6 829,737 + DVU0742 0.13 +0.1 829,747 + DVU0742 0.14 -0.2 829,755 - DVU0742 0.15 +0.4 829,755 - DVU0742 0.15 -0.6 829,819 + DVU0742 0.23 -0.1 829,897 - DVU0742 0.32 -0.8 829,907 - DVU0742 0.33 +0.2 829,911 + DVU0742 0.34 -0.9 829,951 + DVU0742 0.38 -0.7 829,992 + DVU0742 0.43 -0.2 830,000 - DVU0742 0.44 -0.4 830,000 - DVU0742 0.44 -1.0 830,001 - DVU0742 0.44 -1.2 830,040 - DVU0742 0.49 +0.7 830,086 + DVU0742 0.54 +0.1 830,149 - DVU0742 0.62 -0.5 830,226 + DVU0742 0.71 -1.8 830,252 - DVU0742 0.74 -1.2 830,252 - DVU0742 0.74 -0.5 830,290 + DVU0742 0.79 +0.2 830,298 - DVU0742 0.80 -1.2 830,300 + DVU0742 0.80 +0.6 830,344 - DVU0742 0.85 -1.0 830,363 + DVU0742 0.88 -2.3 830,405 - -1.8 830,565 + +0.2 830,572 - -0.2 830,591 - +0.1 830,715 + DVU0743 0.12 -0.0 830,725 + DVU0743 0.13 +0.1 830,725 + DVU0743 0.13 -3.0 830,839 - DVU0743 0.18 -0.2 830,854 - DVU0743 0.19 -0.1 830,929 + DVU0743 0.23 -1.8 830,958 - DVU0743 0.24 -2.6 830,958 - DVU0743 0.24 -0.1 831,050 + DVU0743 0.29 +0.4 831,069 - DVU0743 0.30 +0.0 831,077 - DVU0743 0.30 -0.5 831,227 - DVU0743 0.38 -2.8 831,249 + DVU0743 0.39 +1.1 831,282 + DVU0743 0.41 -2.0 831,442 + DVU0743 0.49 +0.2 831,457 + DVU0743 0.49 -1.0 831,598 - DVU0743 0.56 -2.9 831,641 - DVU0743 0.59 -1.8 831,656 - DVU0743 0.59 +0.1 831,727 + DVU0743 0.63 -0.7 831,815 + DVU0743 0.67 -0.6 831,858 + DVU0743 0.69 +0.0 831,937 - DVU0743 0.73 +0.1 831,937 - DVU0743 0.73 -0.2 831,965 + DVU0743 0.75 +0.4 831,973 - DVU0743 0.75 -1.2 831,974 - DVU0743 0.75 -0.4 832,007 + DVU0743 0.77 -0.1 832,030 - DVU0743 0.78 -0.7 832,030 - DVU0743 0.78 -0.5 832,065 - DVU0743 0.80 -1.7 832,065 - DVU0743 0.80 -2.3 832,157 + DVU0743 0.84 +0.1 832,162 + DVU0743 0.85 -1.5 832,162 + DVU0743 0.85 +0.0 832,167 + DVU0743 0.85 -0.5 832,167 + DVU0743 0.85 -2.2 832,175 - DVU0743 0.85 -1.2 832,298 - +3.4 832,347 - +0.2 832,348 + -0.0 832,390 - +0.5 832,390 - -0.6 832,390 - -0.9 832,400 - -0.9 832,438 + -0.1 832,444 - -2.3 832,634 + -2.0 832,651 + DVU0744 0.11 -1.5 832,687 - DVU0744 0.13 -0.3 832,696 - DVU0744 0.13 -2.0 832,767 + DVU0744 0.17 +0.1 832,789 + DVU0744 0.19 -2.3 832,832 - DVU0744 0.21 -1.8 832,890 - DVU0744 0.25 -0.2 832,999 + DVU0744 0.31 -1.9 833,166 - DVU0744 0.41 -2.1 833,269 + DVU0744 0.47 -1.8 833,277 + DVU0744 0.47 -1.7 833,340 + DVU0744 0.51 -2.3 833,404 - DVU0744 0.55 -1.2 833,411 + DVU0744 0.55 -0.8 833,419 - DVU0744 0.56 -3.6
Or see this region's nucleotide sequence