Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS28340

Experiment: exometabolites; 10% oxygen; 5 mM nitrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS28335 and RR42_RS28340 are separated by 49 nucleotidesRR42_RS28340 and RR42_RS28345 are separated by 25 nucleotides RR42_RS28335: RR42_RS28335 - ferredoxin, at 1,717,817 to 1,718,785 _RS28335 RR42_RS28340: RR42_RS28340 - phthalate 4,5-dioxygenase, at 1,718,835 to 1,720,118 _RS28340 RR42_RS28345: RR42_RS28345 - ABC transporter substrate-binding protein, at 1,720,144 to 1,721,127 _RS28345 Position (kb) 1718 1719 1720 1721Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1717.943 kb on + strand, within RR42_RS28335at 1717.981 kb on - strand, within RR42_RS28335at 1718.037 kb on - strand, within RR42_RS28335at 1718.116 kb on - strand, within RR42_RS28335at 1718.197 kb on - strand, within RR42_RS28335at 1718.358 kb on + strand, within RR42_RS28335at 1718.480 kb on - strand, within RR42_RS28335at 1718.520 kb on - strand, within RR42_RS28335at 1718.620 kb on - strand, within RR42_RS28335at 1718.682 kb on - strand, within RR42_RS28335at 1718.719 kb on + strandat 1718.719 kb on + strandat 1718.719 kb on + strandat 1718.720 kb on - strandat 1718.720 kb on - strandat 1718.837 kb on - strandat 1718.969 kb on - strand, within RR42_RS28340at 1719.467 kb on - strand, within RR42_RS28340at 1719.467 kb on - strand, within RR42_RS28340at 1719.710 kb on + strand, within RR42_RS28340at 1719.710 kb on + strand, within RR42_RS28340at 1719.710 kb on + strand, within RR42_RS28340at 1719.711 kb on + strand, within RR42_RS28340at 1719.711 kb on - strand, within RR42_RS28340at 1719.711 kb on - strand, within RR42_RS28340at 1719.711 kb on - strand, within RR42_RS28340at 1719.711 kb on - strand, within RR42_RS28340at 1719.712 kb on + strand, within RR42_RS28340at 1719.713 kb on - strand, within RR42_RS28340at 1719.713 kb on - strand, within RR42_RS28340at 1719.713 kb on - strand, within RR42_RS28340at 1719.713 kb on - strand, within RR42_RS28340at 1719.720 kb on + strand, within RR42_RS28340at 1719.839 kb on - strand, within RR42_RS28340at 1719.854 kb on - strand, within RR42_RS28340at 1719.857 kb on + strand, within RR42_RS28340at 1719.937 kb on + strand, within RR42_RS28340at 1719.937 kb on + strand, within RR42_RS28340at 1719.938 kb on - strand, within RR42_RS28340at 1719.958 kb on + strand, within RR42_RS28340at 1719.959 kb on - strand, within RR42_RS28340at 1720.112 kb on + strandat 1720.136 kb on + strandat 1720.145 kb on + strandat 1720.568 kb on + strand, within RR42_RS28345at 1720.568 kb on + strand, within RR42_RS28345at 1720.569 kb on - strand, within RR42_RS28345at 1720.719 kb on + strand, within RR42_RS28345at 1720.719 kb on + strand, within RR42_RS28345at 1720.857 kb on - strandat 1720.857 kb on - strand, within RR42_RS28345at 1720.857 kb on - strand, within RR42_RS28345at 1721.058 kb on - strandat 1721.117 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate
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1,717,943 + RR42_RS28335 0.13 +1.1
1,717,981 - RR42_RS28335 0.17 -0.4
1,718,037 - RR42_RS28335 0.23 -0.8
1,718,116 - RR42_RS28335 0.31 +0.4
1,718,197 - RR42_RS28335 0.39 +0.4
1,718,358 + RR42_RS28335 0.56 -0.0
1,718,480 - RR42_RS28335 0.68 -0.5
1,718,520 - RR42_RS28335 0.73 -0.1
1,718,620 - RR42_RS28335 0.83 -0.1
1,718,682 - RR42_RS28335 0.89 +0.5
1,718,719 + -0.2
1,718,719 + -0.1
1,718,719 + -0.1
1,718,720 - -0.6
1,718,720 - -0.2
1,718,837 - +0.3
1,718,969 - RR42_RS28340 0.10 +0.1
1,719,467 - RR42_RS28340 0.49 -0.4
1,719,467 - RR42_RS28340 0.49 +0.9
1,719,710 + RR42_RS28340 0.68 -0.5
1,719,710 + RR42_RS28340 0.68 +0.3
1,719,710 + RR42_RS28340 0.68 +1.3
1,719,711 + RR42_RS28340 0.68 -0.4
1,719,711 - RR42_RS28340 0.68 +0.6
1,719,711 - RR42_RS28340 0.68 +2.7
1,719,711 - RR42_RS28340 0.68 +0.2
1,719,711 - RR42_RS28340 0.68 +0.0
1,719,712 + RR42_RS28340 0.68 +0.0
1,719,713 - RR42_RS28340 0.68 +2.4
1,719,713 - RR42_RS28340 0.68 +2.0
1,719,713 - RR42_RS28340 0.68 -0.5
1,719,713 - RR42_RS28340 0.68 -2.3
1,719,720 + RR42_RS28340 0.69 -0.4
1,719,839 - RR42_RS28340 0.78 -0.6
1,719,854 - RR42_RS28340 0.79 -0.0
1,719,857 + RR42_RS28340 0.80 -0.7
1,719,937 + RR42_RS28340 0.86 +0.2
1,719,937 + RR42_RS28340 0.86 +0.3
1,719,938 - RR42_RS28340 0.86 +0.2
1,719,958 + RR42_RS28340 0.87 +0.1
1,719,959 - RR42_RS28340 0.88 +0.1
1,720,112 + +0.3
1,720,136 + +0.7
1,720,145 + +0.1
1,720,568 + RR42_RS28345 0.43 -0.3
1,720,568 + RR42_RS28345 0.43 +0.5
1,720,569 - RR42_RS28345 0.43 +0.8
1,720,719 + RR42_RS28345 0.58 +3.7
1,720,719 + RR42_RS28345 0.58 -0.4
1,720,857 - -0.6
1,720,857 - RR42_RS28345 0.72 +0.0
1,720,857 - RR42_RS28345 0.72 -0.2
1,721,058 - +0.3
1,721,117 + +1.3

Or see this region's nucleotide sequence