Experiment: exometabolites; 10% oxygen; 5 mM nitrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25115 and RR42_RS25120 are separated by 39 nucleotides RR42_RS25120 and RR42_RS25125 are separated by 323 nucleotides
RR42_RS25115: RR42_RS25115 - IclR family transcriptional regulator, at 972,019 to 972,762
_RS25115
RR42_RS25120: RR42_RS25120 - IclR family transcriptional regulator, at 972,802 to 973,581
_RS25120
RR42_RS25125: RR42_RS25125 - 3-oxoacyl-ACP reductase, at 973,905 to 974,654
_RS25125
Position (kb) 972
973
974 Strain fitness (log2 ratio) -1
0
1
2 at 971.889 kb on + strand at 971.911 kb on + strand at 972.172 kb on + strand, within RR42_RS25115 at 972.226 kb on + strand, within RR42_RS25115 at 972.226 kb on + strand, within RR42_RS25115 at 972.227 kb on - strand, within RR42_RS25115 at 972.473 kb on - strand, within RR42_RS25115 at 972.563 kb on - strand, within RR42_RS25115 at 972.563 kb on - strand, within RR42_RS25115 at 972.563 kb on - strand, within RR42_RS25115 at 972.813 kb on + strand at 972.813 kb on + strand at 972.814 kb on - strand at 972.993 kb on - strand, within RR42_RS25120 at 972.993 kb on - strand, within RR42_RS25120 at 973.106 kb on + strand, within RR42_RS25120 at 973.235 kb on + strand, within RR42_RS25120 at 973.235 kb on + strand, within RR42_RS25120 at 973.235 kb on + strand, within RR42_RS25120 at 973.243 kb on - strand, within RR42_RS25120 at 973.243 kb on - strand, within RR42_RS25120 at 973.347 kb on - strand, within RR42_RS25120 at 973.507 kb on - strand at 973.680 kb on + strand at 973.680 kb on + strand at 973.680 kb on + strand at 973.680 kb on + strand at 973.815 kb on + strand at 973.817 kb on + strand at 973.818 kb on - strand at 973.818 kb on - strand at 973.888 kb on + strand at 974.200 kb on - strand, within RR42_RS25125 at 974.200 kb on - strand, within RR42_RS25125 at 974.200 kb on - strand, within RR42_RS25125 at 974.537 kb on + strand, within RR42_RS25125 at 974.537 kb on + strand, within RR42_RS25125 at 974.537 kb on + strand, within RR42_RS25125 at 974.565 kb on - strand, within RR42_RS25125 at 974.565 kb on - strand, within RR42_RS25125
Per-strain Table
Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate remove 971,889 + +0.2 971,911 + +0.4 972,172 + RR42_RS25115 0.21 -0.2 972,226 + RR42_RS25115 0.28 +0.1 972,226 + RR42_RS25115 0.28 -1.1 972,227 - RR42_RS25115 0.28 +0.3 972,473 - RR42_RS25115 0.61 +0.2 972,563 - RR42_RS25115 0.73 -0.0 972,563 - RR42_RS25115 0.73 -0.3 972,563 - RR42_RS25115 0.73 -0.7 972,813 + +1.2 972,813 + +0.3 972,814 - +0.5 972,993 - RR42_RS25120 0.24 +0.6 972,993 - RR42_RS25120 0.24 +0.5 973,106 + RR42_RS25120 0.39 +1.9 973,235 + RR42_RS25120 0.56 +0.2 973,235 + RR42_RS25120 0.56 -0.0 973,235 + RR42_RS25120 0.56 -0.4 973,243 - RR42_RS25120 0.57 +0.9 973,243 - RR42_RS25120 0.57 -0.6 973,347 - RR42_RS25120 0.70 +0.5 973,507 - -1.0 973,680 + +0.0 973,680 + +0.3 973,680 + -0.5 973,680 + -0.5 973,815 + +0.3 973,817 + -0.8 973,818 - -0.0 973,818 - -0.0 973,888 + +0.1 974,200 - RR42_RS25125 0.39 +0.5 974,200 - RR42_RS25125 0.39 +0.5 974,200 - RR42_RS25125 0.39 +1.0 974,537 + RR42_RS25125 0.84 -1.3 974,537 + RR42_RS25125 0.84 +0.3 974,537 + RR42_RS25125 0.84 -0.0 974,565 - RR42_RS25125 0.88 +0.3 974,565 - RR42_RS25125 0.88 -0.5
Or see this region's nucleotide sequence