Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24030

Experiment: exometabolites; 10% oxygen; 5 mM nitrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24025 and RR42_RS24030 are separated by 17 nucleotides RR42_RS24025: RR42_RS24025 - methylmalonate-semialdehyde dehydrogenase, at 713,856 to 715,379 _RS24025 RR42_RS24030: RR42_RS24030 - 3-hydroxyisobutyrate dehydrogenase, at 715,397 to 716,293 _RS24030 Position (kb) 715 716 717Strain fitness (log2 ratio) -1 0 1at 714.904 kb on + strand, within RR42_RS24025at 715.616 kb on + strand, within RR42_RS24030at 715.616 kb on + strand, within RR42_RS24030at 716.459 kb on + strandat 716.460 kb on - strandat 716.460 kb on - strandat 716.484 kb on + strandat 716.533 kb on + strandat 716.533 kb on + strandat 716.534 kb on - strandat 716.534 kb on - strandat 716.534 kb on - strandat 716.534 kb on - strandat 716.534 kb on - strandat 716.558 kb on + strandat 716.559 kb on - strandat 716.559 kb on - strandat 716.575 kb on + strandat 716.621 kb on - strandat 716.633 kb on + strandat 716.634 kb on - strandat 716.634 kb on - strandat 716.798 kb on + strandat 716.799 kb on - strandat 716.799 kb on - strandat 716.799 kb on - strandat 716.799 kb on - strandat 716.799 kb on - strandat 716.799 kb on - strandat 716.812 kb on - strandat 716.859 kb on + strandat 716.939 kb on - strandat 716.939 kb on - strandat 716.979 kb on + strandat 716.980 kb on - strandat 717.074 kb on + strandat 717.075 kb on - strandat 717.075 kb on - strandat 717.187 kb on + strandat 717.187 kb on + strandat 717.187 kb on + strandat 717.233 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate
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714,904 + RR42_RS24025 0.69 -0.5
715,616 + RR42_RS24030 0.24 -0.7
715,616 + RR42_RS24030 0.24 -0.9
716,459 + +1.2
716,460 - -0.1
716,460 - -0.8
716,484 + -1.0
716,533 + +0.1
716,533 + -0.1
716,534 - -1.3
716,534 - +0.1
716,534 - -0.6
716,534 - -0.7
716,534 - -0.9
716,558 + +0.3
716,559 - +0.3
716,559 - -0.1
716,575 + +0.4
716,621 - -0.3
716,633 + +1.0
716,634 - -0.3
716,634 - -0.4
716,798 + -0.0
716,799 - +0.7
716,799 - -0.2
716,799 - -0.1
716,799 - +0.1
716,799 - -0.5
716,799 - -1.3
716,812 - -1.2
716,859 + -0.0
716,939 - -0.6
716,939 - -0.2
716,979 + -0.8
716,980 - -1.1
717,074 + -0.5
717,075 - -0.2
717,075 - -0.3
717,187 + -0.6
717,187 + -0.8
717,187 + -0.6
717,233 + +0.8

Or see this region's nucleotide sequence