Experiment: exometabolites; 10% oxygen; 5 mM nitrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22790 and RR42_RS22795 are separated by 66 nucleotides RR42_RS22795 and RR42_RS22800 are separated by 30 nucleotides
RR42_RS22790: RR42_RS22790 - MmgE/PrpD family protein, at 444,998 to 446,410
_RS22790
RR42_RS22795: RR42_RS22795 - hypothetical protein, at 446,477 to 447,442
_RS22795
RR42_RS22800: RR42_RS22800 - DSBA oxidoreductase, at 447,473 to 449,029
_RS22800
Position (kb) 446
447
448 Strain fitness (log2 ratio) -1
0
1 at 445.604 kb on + strand, within RR42_RS22790 at 445.944 kb on - strand, within RR42_RS22790 at 446.107 kb on + strand, within RR42_RS22790 at 446.270 kb on + strand at 446.270 kb on + strand at 446.271 kb on - strand at 446.271 kb on - strand at 446.728 kb on + strand, within RR42_RS22795 at 446.728 kb on + strand, within RR42_RS22795 at 446.728 kb on + strand, within RR42_RS22795 at 446.729 kb on - strand, within RR42_RS22795 at 446.729 kb on - strand, within RR42_RS22795 at 446.729 kb on - strand, within RR42_RS22795 at 447.017 kb on + strand, within RR42_RS22795 at 447.017 kb on + strand, within RR42_RS22795 at 447.018 kb on - strand, within RR42_RS22795 at 447.230 kb on + strand, within RR42_RS22795 at 447.230 kb on + strand, within RR42_RS22795 at 447.231 kb on - strand, within RR42_RS22795 at 447.231 kb on - strand, within RR42_RS22795 at 447.231 kb on - strand, within RR42_RS22795 at 447.231 kb on - strand, within RR42_RS22795 at 447.787 kb on - strand, within RR42_RS22800 at 447.972 kb on + strand, within RR42_RS22800 at 447.972 kb on + strand, within RR42_RS22800 at 447.972 kb on + strand, within RR42_RS22800 at 448.170 kb on + strand, within RR42_RS22800 at 448.170 kb on + strand, within RR42_RS22800 at 448.171 kb on - strand, within RR42_RS22800 at 448.171 kb on - strand, within RR42_RS22800 at 448.171 kb on - strand, within RR42_RS22800 at 448.172 kb on + strand, within RR42_RS22800 at 448.357 kb on + strand, within RR42_RS22800 at 448.357 kb on + strand, within RR42_RS22800 at 448.357 kb on + strand, within RR42_RS22800 at 448.358 kb on - strand, within RR42_RS22800
Per-strain Table
Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate remove 445,604 + RR42_RS22790 0.43 +0.8 445,944 - RR42_RS22790 0.67 -0.1 446,107 + RR42_RS22790 0.78 +0.6 446,270 + -0.2 446,270 + +1.3 446,271 - -0.5 446,271 - +0.0 446,728 + RR42_RS22795 0.26 +0.5 446,728 + RR42_RS22795 0.26 +0.2 446,728 + RR42_RS22795 0.26 -0.6 446,729 - RR42_RS22795 0.26 -0.2 446,729 - RR42_RS22795 0.26 -1.4 446,729 - RR42_RS22795 0.26 +0.2 447,017 + RR42_RS22795 0.56 +0.3 447,017 + RR42_RS22795 0.56 -0.1 447,018 - RR42_RS22795 0.56 +0.4 447,230 + RR42_RS22795 0.78 -0.2 447,230 + RR42_RS22795 0.78 +0.4 447,231 - RR42_RS22795 0.78 +0.3 447,231 - RR42_RS22795 0.78 +0.6 447,231 - RR42_RS22795 0.78 +0.0 447,231 - RR42_RS22795 0.78 +0.0 447,787 - RR42_RS22800 0.20 +0.3 447,972 + RR42_RS22800 0.32 +1.6 447,972 + RR42_RS22800 0.32 +0.1 447,972 + RR42_RS22800 0.32 +0.5 448,170 + RR42_RS22800 0.45 +0.0 448,170 + RR42_RS22800 0.45 +0.6 448,171 - RR42_RS22800 0.45 +0.1 448,171 - RR42_RS22800 0.45 -0.3 448,171 - RR42_RS22800 0.45 -1.1 448,172 + RR42_RS22800 0.45 -0.5 448,357 + RR42_RS22800 0.57 +1.5 448,357 + RR42_RS22800 0.57 +0.2 448,357 + RR42_RS22800 0.57 +0.9 448,358 - RR42_RS22800 0.57 +0.3
Or see this region's nucleotide sequence