Experiment: exometabolites; 10% oxygen; 5 mM nitrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22280 and RR42_RS22285 are separated by 72 nucleotides RR42_RS22285 and RR42_RS22290 are separated by 123 nucleotides RR42_RS22290 and RR42_RS22295 are separated by 50 nucleotides RR42_RS22295 and RR42_RS22300 are separated by 226 nucleotides
RR42_RS22280: RR42_RS22280 - cupin, at 340,023 to 340,478
_RS22280
RR42_RS22285: RR42_RS22285 - methionine sulfoxide reductase A, at 340,551 to 341,291
_RS22285
RR42_RS22290: RR42_RS22290 - cytochrome C biogenesis protein, at 341,415 to 343,223
_RS22290
RR42_RS22295: RR42_RS22295 - methionine sulfoxide reductase B, at 343,274 to 343,813
_RS22295
RR42_RS22300: RR42_RS22300 - chemotaxis protein CheY, at 344,040 to 344,762
_RS22300
Position (kb) 341
342
343
344 Strain fitness (log2 ratio) -2
-1
0
1 at 340.437 kb on + strand at 340.651 kb on + strand, within RR42_RS22285 at 340.651 kb on + strand, within RR42_RS22285 at 340.652 kb on - strand, within RR42_RS22285 at 340.690 kb on + strand, within RR42_RS22285 at 340.691 kb on - strand, within RR42_RS22285 at 340.779 kb on - strand, within RR42_RS22285 at 340.780 kb on + strand, within RR42_RS22285 at 340.780 kb on + strand, within RR42_RS22285 at 340.781 kb on - strand, within RR42_RS22285 at 340.781 kb on - strand, within RR42_RS22285 at 340.781 kb on - strand, within RR42_RS22285 at 340.835 kb on - strand, within RR42_RS22285 at 340.994 kb on - strand, within RR42_RS22285 at 341.322 kb on + strand at 341.323 kb on - strand at 341.355 kb on + strand at 341.435 kb on - strand at 341.435 kb on - strand at 341.513 kb on - strand at 341.776 kb on + strand, within RR42_RS22290 at 341.776 kb on + strand, within RR42_RS22290 at 341.776 kb on + strand, within RR42_RS22290 at 341.777 kb on - strand, within RR42_RS22290 at 341.777 kb on - strand, within RR42_RS22290 at 341.845 kb on + strand, within RR42_RS22290 at 341.845 kb on + strand, within RR42_RS22290 at 341.845 kb on + strand, within RR42_RS22290 at 342.001 kb on + strand, within RR42_RS22290 at 342.055 kb on + strand, within RR42_RS22290 at 342.100 kb on + strand, within RR42_RS22290 at 342.100 kb on + strand, within RR42_RS22290 at 342.100 kb on + strand, within RR42_RS22290 at 342.254 kb on - strand, within RR42_RS22290 at 342.254 kb on - strand, within RR42_RS22290 at 342.254 kb on - strand, within RR42_RS22290 at 342.254 kb on - strand, within RR42_RS22290 at 342.286 kb on + strand, within RR42_RS22290 at 342.287 kb on - strand, within RR42_RS22290 at 342.500 kb on + strand, within RR42_RS22290 at 343.202 kb on - strand at 343.211 kb on + strand at 343.211 kb on + strand at 343.436 kb on + strand, within RR42_RS22295 at 343.659 kb on - strand, within RR42_RS22295 at 343.835 kb on + strand at 343.835 kb on + strand at 343.893 kb on + strand at 343.894 kb on - strand at 343.894 kb on - strand at 343.934 kb on + strand at 343.972 kb on - strand at 344.095 kb on + strand at 344.095 kb on + strand at 344.096 kb on - strand at 344.096 kb on - strand at 344.124 kb on + strand, within RR42_RS22300 at 344.125 kb on - strand, within RR42_RS22300
Per-strain Table
Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate remove 340,437 + -0.2 340,651 + RR42_RS22285 0.13 +0.4 340,651 + RR42_RS22285 0.13 +1.4 340,652 - RR42_RS22285 0.14 +0.6 340,690 + RR42_RS22285 0.19 +0.5 340,691 - RR42_RS22285 0.19 -1.6 340,779 - RR42_RS22285 0.31 +0.0 340,780 + RR42_RS22285 0.31 -0.3 340,780 + RR42_RS22285 0.31 -0.4 340,781 - RR42_RS22285 0.31 +0.3 340,781 - RR42_RS22285 0.31 +0.8 340,781 - RR42_RS22285 0.31 +0.2 340,835 - RR42_RS22285 0.38 -0.2 340,994 - RR42_RS22285 0.60 -0.2 341,322 + +0.2 341,323 - -0.2 341,355 + +0.4 341,435 - +0.2 341,435 - -1.2 341,513 - -0.6 341,776 + RR42_RS22290 0.20 +0.8 341,776 + RR42_RS22290 0.20 -1.1 341,776 + RR42_RS22290 0.20 +0.2 341,777 - RR42_RS22290 0.20 +0.4 341,777 - RR42_RS22290 0.20 -0.4 341,845 + RR42_RS22290 0.24 -1.1 341,845 + RR42_RS22290 0.24 +0.9 341,845 + RR42_RS22290 0.24 -0.4 342,001 + RR42_RS22290 0.32 -0.5 342,055 + RR42_RS22290 0.35 +0.1 342,100 + RR42_RS22290 0.38 -0.7 342,100 + RR42_RS22290 0.38 -1.5 342,100 + RR42_RS22290 0.38 -0.3 342,254 - RR42_RS22290 0.46 +0.1 342,254 - RR42_RS22290 0.46 -0.1 342,254 - RR42_RS22290 0.46 -0.6 342,254 - RR42_RS22290 0.46 -0.6 342,286 + RR42_RS22290 0.48 -0.7 342,287 - RR42_RS22290 0.48 -0.3 342,500 + RR42_RS22290 0.60 -1.4 343,202 - -0.7 343,211 + -1.7 343,211 + +1.1 343,436 + RR42_RS22295 0.30 -1.0 343,659 - RR42_RS22295 0.71 -2.5 343,835 + -1.1 343,835 + +0.2 343,893 + -0.1 343,894 - +1.1 343,894 - +0.3 343,934 + +1.6 343,972 - +0.3 344,095 + +0.4 344,095 + +0.3 344,096 - +0.5 344,096 - -0.7 344,124 + RR42_RS22300 0.12 +0.4 344,125 - RR42_RS22300 0.12 +0.0
Or see this region's nucleotide sequence