Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16305

Experiment: exometabolites; 10% oxygen; 5 mM nitrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS16300 and RR42_RS16305 are separated by 14 nucleotidesRR42_RS16305 and RR42_RS16310 are separated by 578 nucleotides RR42_RS16300: RR42_RS16300 - hypothetical protein, at 3,527,751 to 3,528,998 _RS16300 RR42_RS16305: RR42_RS16305 - hypothetical protein, at 3,529,013 to 3,529,534 _RS16305 RR42_RS16310: RR42_RS16310 - hypothetical protein, at 3,530,113 to 3,530,634 _RS16310 Position (kb) 3529 3530Strain fitness (log2 ratio) -3 -2 -1 0 1at 3528.090 kb on + strand, within RR42_RS16300at 3528.329 kb on - strand, within RR42_RS16300at 3528.418 kb on + strand, within RR42_RS16300at 3528.502 kb on + strand, within RR42_RS16300at 3528.505 kb on + strand, within RR42_RS16300at 3528.528 kb on - strand, within RR42_RS16300at 3528.528 kb on - strand, within RR42_RS16300at 3528.569 kb on - strand, within RR42_RS16300at 3528.569 kb on - strand, within RR42_RS16300at 3528.570 kb on + strand, within RR42_RS16300at 3528.571 kb on - strand, within RR42_RS16300at 3528.660 kb on + strand, within RR42_RS16300at 3528.660 kb on + strand, within RR42_RS16300at 3528.689 kb on - strand, within RR42_RS16300at 3528.689 kb on - strand, within RR42_RS16300at 3529.338 kb on + strand, within RR42_RS16305at 3529.411 kb on + strand, within RR42_RS16305at 3529.483 kb on - strandat 3530.494 kb on + strand, within RR42_RS16310

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Per-strain Table

Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate
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3,528,090 + RR42_RS16300 0.27 -0.3
3,528,329 - RR42_RS16300 0.46 -1.1
3,528,418 + RR42_RS16300 0.53 +1.2
3,528,502 + RR42_RS16300 0.60 +0.2
3,528,505 + RR42_RS16300 0.60 -0.4
3,528,528 - RR42_RS16300 0.62 +0.1
3,528,528 - RR42_RS16300 0.62 -1.1
3,528,569 - RR42_RS16300 0.66 -1.0
3,528,569 - RR42_RS16300 0.66 +0.3
3,528,570 + RR42_RS16300 0.66 -2.9
3,528,571 - RR42_RS16300 0.66 +0.6
3,528,660 + RR42_RS16300 0.73 -0.2
3,528,660 + RR42_RS16300 0.73 -0.2
3,528,689 - RR42_RS16300 0.75 -0.4
3,528,689 - RR42_RS16300 0.75 -0.3
3,529,338 + RR42_RS16305 0.62 -0.1
3,529,411 + RR42_RS16305 0.76 -1.3
3,529,483 - +0.0
3,530,494 + RR42_RS16310 0.73 +1.2

Or see this region's nucleotide sequence