Experiment: exometabolites; 10% oxygen; 5 mM nitrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS08795 and RR42_RS08800 are separated by 140 nucleotides RR42_RS08800 and RR42_RS08805 are separated by 52 nucleotides RR42_RS08805 and RR42_RS08810 are separated by 10 nucleotides RR42_RS08810 and RR42_RS08815 are separated by 106 nucleotides
RR42_RS08795: RR42_RS08795 - molybdopterin-guanine dinucleotide biosynthesis protein B, at 1,842,850 to 1,843,428
_RS08795
RR42_RS08800: RR42_RS08800 - peptidylprolyl isomerase, at 1,843,569 to 1,844,315
_RS08800
RR42_RS08805: RR42_RS08805 - nitrate reductase, at 1,844,368 to 1,845,051
_RS08805
RR42_RS08810: RR42_RS08810 - nitrate reductase, at 1,845,062 to 1,845,766
_RS08810
RR42_RS08815: RR42_RS08815 - nitrate reductase, at 1,845,873 to 1,847,426
_RS08815
Position (kb)
1844
1845
1846 Strain fitness (log2 ratio)
-1
0
1 at 1843.769 kb on - strand, within RR42_RS08800 at 1844.250 kb on - strand at 1844.305 kb on - strand at 1844.520 kb on + strand, within RR42_RS08805 at 1844.521 kb on - strand, within RR42_RS08805 at 1844.522 kb on + strand, within RR42_RS08805 at 1844.523 kb on - strand, within RR42_RS08805 at 1845.011 kb on + strand at 1845.012 kb on - strand at 1845.012 kb on - strand at 1845.012 kb on - strand at 1845.012 kb on - strand at 1845.012 kb on - strand at 1845.017 kb on + strand at 1845.307 kb on - strand, within RR42_RS08810 at 1845.441 kb on + strand, within RR42_RS08810 at 1845.442 kb on - strand, within RR42_RS08810 at 1845.487 kb on - strand, within RR42_RS08810 at 1845.594 kb on + strand, within RR42_RS08810 at 1845.594 kb on + strand, within RR42_RS08810 at 1845.594 kb on + strand, within RR42_RS08810 at 1845.595 kb on - strand, within RR42_RS08810
Per-strain Table
Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate remove 1,843,769 - RR42_RS08800 0.27 +0.5 1,844,250 - +0.8 1,844,305 - +0.0 1,844,520 + RR42_RS08805 0.22 -1.1 1,844,521 - RR42_RS08805 0.22 +0.4 1,844,522 + RR42_RS08805 0.23 -0.6 1,844,523 - RR42_RS08805 0.23 -1.4 1,845,011 + +0.5 1,845,012 - +1.5 1,845,012 - -0.6 1,845,012 - +0.3 1,845,012 - -0.3 1,845,012 - +0.5 1,845,017 + +0.4 1,845,307 - RR42_RS08810 0.35 -0.3 1,845,441 + RR42_RS08810 0.54 +0.1 1,845,442 - RR42_RS08810 0.54 +0.5 1,845,487 - RR42_RS08810 0.60 -0.7 1,845,594 + RR42_RS08810 0.75 +0.5 1,845,594 + RR42_RS08810 0.75 +0.7 1,845,594 + RR42_RS08810 0.75 -0.5 1,845,595 - RR42_RS08810 0.76 -0.0
Or see this region's nucleotide sequence