Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08220

Experiment: exometabolites; 10% oxygen; 5 mM nitrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS08215 and RR42_RS08220 are separated by 418 nucleotidesRR42_RS08220 and RR42_RS08225 are separated by 766 nucleotides RR42_RS08215: RR42_RS08215 - DNA-binding protein, at 1,743,896 to 1,744,501 _RS08215 RR42_RS08220: RR42_RS08220 - hypothetical protein, at 1,744,920 to 1,745,153 _RS08220 RR42_RS08225: RR42_RS08225 - chromosome partitioning protein ParB, at 1,745,920 to 1,747,302 _RS08225 Position (kb) 1744 1745 1746Strain fitness (log2 ratio) -1 0 1at 1744.708 kb on - strandat 1744.895 kb on + strandat 1744.965 kb on - strand, within RR42_RS08220at 1745.011 kb on + strand, within RR42_RS08220at 1745.043 kb on - strand, within RR42_RS08220at 1745.156 kb on + strandat 1745.157 kb on - strandat 1745.185 kb on + strandat 1745.302 kb on + strandat 1745.371 kb on - strandat 1745.399 kb on + strandat 1745.399 kb on + strandat 1745.556 kb on - strandat 1745.645 kb on + strandat 1745.646 kb on - strandat 1745.789 kb on + strandat 1745.790 kb on - strandat 1745.834 kb on + strandat 1745.834 kb on + strandat 1745.835 kb on - strandat 1745.920 kb on - strandat 1745.977 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate
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1,744,708 - -0.7
1,744,895 + -0.2
1,744,965 - RR42_RS08220 0.19 +0.1
1,745,011 + RR42_RS08220 0.39 +0.9
1,745,043 - RR42_RS08220 0.53 +0.2
1,745,156 + +0.3
1,745,157 - +0.7
1,745,185 + +1.0
1,745,302 + -1.3
1,745,371 - +1.2
1,745,399 + +0.2
1,745,399 + -1.0
1,745,556 - +0.8
1,745,645 + +0.7
1,745,646 - -0.2
1,745,789 + -0.1
1,745,790 - -0.3
1,745,834 + +0.3
1,745,834 + -0.7
1,745,835 - +0.7
1,745,920 - -0.0
1,745,977 + +0.0

Or see this region's nucleotide sequence