Experiment: exometabolites; 10% oxygen; 5 mM nitrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03970 and RR42_RS03975 are separated by 7 nucleotides RR42_RS03975 and RR42_RS03980 are separated by 414 nucleotides RR42_RS03980 and RR42_RS03985 are separated by 28 nucleotides
RR42_RS03970: RR42_RS03970 - glycosyl transferase family 2, at 876,125 to 876,940
_RS03970
RR42_RS03975: RR42_RS03975 - acetyltransferase, at 876,948 to 877,514
_RS03975
RR42_RS03980: RR42_RS03980 - Fis family transcriptional regulator, at 877,929 to 879,251
_RS03980
RR42_RS03985: RR42_RS03985 - histidine kinase, at 879,280 to 881,196
_RS03985
Position (kb) 877
878
879
880 Strain fitness (log2 ratio) -2
-1
0
1 at 876.949 kb on + strand at 877.119 kb on + strand, within RR42_RS03975 at 877.119 kb on + strand, within RR42_RS03975 at 877.120 kb on - strand, within RR42_RS03975 at 877.150 kb on - strand, within RR42_RS03975 at 877.174 kb on + strand, within RR42_RS03975 at 877.175 kb on - strand, within RR42_RS03975 at 877.253 kb on - strand, within RR42_RS03975 at 877.331 kb on - strand, within RR42_RS03975 at 877.331 kb on - strand, within RR42_RS03975 at 877.334 kb on + strand, within RR42_RS03975 at 877.334 kb on + strand, within RR42_RS03975 at 877.335 kb on - strand, within RR42_RS03975 at 877.335 kb on - strand, within RR42_RS03975 at 877.335 kb on - strand, within RR42_RS03975 at 877.335 kb on - strand, within RR42_RS03975 at 877.335 kb on - strand, within RR42_RS03975 at 877.829 kb on - strand at 877.892 kb on + strand at 877.892 kb on + strand at 878.338 kb on + strand, within RR42_RS03980 at 878.339 kb on - strand, within RR42_RS03980 at 878.430 kb on - strand, within RR42_RS03980 at 879.706 kb on - strand, within RR42_RS03985
Per-strain Table
Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate remove 876,949 + -1.2 877,119 + RR42_RS03975 0.30 -0.1 877,119 + RR42_RS03975 0.30 -0.3 877,120 - RR42_RS03975 0.30 -0.6 877,150 - RR42_RS03975 0.36 -0.5 877,174 + RR42_RS03975 0.40 -0.0 877,175 - RR42_RS03975 0.40 +1.5 877,253 - RR42_RS03975 0.54 -0.5 877,331 - RR42_RS03975 0.68 +1.3 877,331 - RR42_RS03975 0.68 +0.4 877,334 + RR42_RS03975 0.68 -0.4 877,334 + RR42_RS03975 0.68 -0.5 877,335 - RR42_RS03975 0.68 +0.3 877,335 - RR42_RS03975 0.68 -1.5 877,335 - RR42_RS03975 0.68 +0.5 877,335 - RR42_RS03975 0.68 +0.1 877,335 - RR42_RS03975 0.68 -0.1 877,829 - +0.6 877,892 + -0.2 877,892 + +0.2 878,338 + RR42_RS03980 0.31 -2.6 878,339 - RR42_RS03980 0.31 -0.5 878,430 - RR42_RS03980 0.38 -0.6 879,706 - RR42_RS03985 0.22 -0.9
Or see this region's nucleotide sequence