Experiment: exometabolites; 10% oxygen; 5 mM nitrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03330 and RR42_RS03335 are separated by 64 nucleotides RR42_RS03335 and RR42_RS03340 are separated by 80 nucleotides RR42_RS03340 and RR42_RS03345 are separated by 35 nucleotides
RR42_RS03330: RR42_RS03330 - GYD family protein, at 741,959 to 742,252
_RS03330
RR42_RS03335: RR42_RS03335 - glycerol-3-phosphate acyltransferase, at 742,317 to 742,934
_RS03335
RR42_RS03340: RR42_RS03340 - membrane protein, at 743,015 to 743,506
_RS03340
RR42_RS03345: RR42_RS03345 - recombinase XerD, at 743,542 to 744,462
_RS03345
Position (kb) 743
744 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 742.103 kb on + strand, within RR42_RS03330 at 742.104 kb on - strand, within RR42_RS03330 at 742.104 kb on - strand, within RR42_RS03330 at 742.104 kb on - strand, within RR42_RS03330 at 742.114 kb on - strand, within RR42_RS03330 at 742.124 kb on - strand, within RR42_RS03330 at 742.124 kb on - strand, within RR42_RS03330 at 742.250 kb on + strand at 742.251 kb on - strand at 742.254 kb on + strand at 742.254 kb on + strand at 742.254 kb on + strand at 742.254 kb on + strand at 742.254 kb on + strand at 742.254 kb on + strand at 742.255 kb on - strand at 742.255 kb on - strand at 742.255 kb on - strand at 743.016 kb on + strand at 743.017 kb on - strand at 743.017 kb on - strand at 743.081 kb on - strand, within RR42_RS03340 at 743.081 kb on - strand, within RR42_RS03340 at 743.114 kb on - strand, within RR42_RS03340 at 743.115 kb on + strand, within RR42_RS03340 at 743.115 kb on + strand, within RR42_RS03340 at 743.115 kb on + strand, within RR42_RS03340 at 743.116 kb on - strand, within RR42_RS03340 at 743.116 kb on - strand, within RR42_RS03340 at 743.209 kb on + strand, within RR42_RS03340 at 743.210 kb on - strand, within RR42_RS03340 at 743.210 kb on - strand, within RR42_RS03340 at 743.281 kb on + strand, within RR42_RS03340 at 743.418 kb on + strand, within RR42_RS03340 at 743.418 kb on + strand, within RR42_RS03340 at 743.424 kb on + strand, within RR42_RS03340 at 743.543 kb on + strand at 743.544 kb on - strand at 743.604 kb on - strand at 743.861 kb on + strand, within RR42_RS03345 at 743.862 kb on - strand, within RR42_RS03345 at 743.862 kb on - strand, within RR42_RS03345 at 744.011 kb on + strand, within RR42_RS03345 at 744.011 kb on + strand, within RR42_RS03345 at 744.011 kb on + strand, within RR42_RS03345 at 744.011 kb on + strand, within RR42_RS03345 at 744.011 kb on + strand, within RR42_RS03345 at 744.011 kb on + strand, within RR42_RS03345 at 744.012 kb on - strand, within RR42_RS03345
Per-strain Table
Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate remove 742,103 + RR42_RS03330 0.49 +0.2 742,104 - RR42_RS03330 0.49 +0.5 742,104 - RR42_RS03330 0.49 +1.2 742,104 - RR42_RS03330 0.49 -1.5 742,114 - RR42_RS03330 0.53 +0.9 742,124 - RR42_RS03330 0.56 +1.5 742,124 - RR42_RS03330 0.56 +0.5 742,250 + -1.5 742,251 - +1.4 742,254 + +0.5 742,254 + +0.7 742,254 + +1.0 742,254 + -0.1 742,254 + +0.4 742,254 + -2.8 742,255 - +0.7 742,255 - -0.9 742,255 - +0.1 743,016 + +0.4 743,017 - +1.5 743,017 - +0.6 743,081 - RR42_RS03340 0.13 +0.4 743,081 - RR42_RS03340 0.13 +0.3 743,114 - RR42_RS03340 0.20 -0.7 743,115 + RR42_RS03340 0.20 +0.4 743,115 + RR42_RS03340 0.20 +0.4 743,115 + RR42_RS03340 0.20 +0.8 743,116 - RR42_RS03340 0.21 +1.1 743,116 - RR42_RS03340 0.21 +0.4 743,209 + RR42_RS03340 0.39 +0.8 743,210 - RR42_RS03340 0.40 -0.1 743,210 - RR42_RS03340 0.40 +0.9 743,281 + RR42_RS03340 0.54 +0.6 743,418 + RR42_RS03340 0.82 +0.4 743,418 + RR42_RS03340 0.82 +0.6 743,424 + RR42_RS03340 0.83 -0.1 743,543 + -1.8 743,544 - +0.5 743,604 - +1.7 743,861 + RR42_RS03345 0.35 +0.8 743,862 - RR42_RS03345 0.35 +0.6 743,862 - RR42_RS03345 0.35 -0.8 744,011 + RR42_RS03345 0.51 +1.1 744,011 + RR42_RS03345 0.51 +0.7 744,011 + RR42_RS03345 0.51 +0.1 744,011 + RR42_RS03345 0.51 -0.8 744,011 + RR42_RS03345 0.51 +0.8 744,011 + RR42_RS03345 0.51 +3.5 744,012 - RR42_RS03345 0.51 -0.6
Or see this region's nucleotide sequence