Experiment: exometabolites; 10% oxygen; 5 mM nitrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02460 and RR42_RS02465 are separated by 201 nucleotides RR42_RS02465 and RR42_RS02470 are separated by 105 nucleotides RR42_RS02470 and RR42_RS02475 overlap by 4 nucleotides
RR42_RS02460: RR42_RS02460 - LysR family transcriptional regulator, at 553,879 to 554,775
_RS02460
RR42_RS02465: RR42_RS02465 - membrane protein, at 554,977 to 555,864
_RS02465
RR42_RS02470: RR42_RS02470 - dihydroneopterin triphosphate pyrophosphatase, at 555,970 to 556,443
_RS02470
RR42_RS02475: RR42_RS02475 - endonuclease, at 556,440 to 557,228
_RS02475
Position (kb) 554
555
556 Strain fitness (log2 ratio) -2
-1
0
1
2 at 554.199 kb on + strand, within RR42_RS02460 at 554.199 kb on + strand, within RR42_RS02460 at 554.200 kb on - strand, within RR42_RS02460 at 554.200 kb on - strand, within RR42_RS02460 at 554.347 kb on + strand, within RR42_RS02460 at 554.378 kb on - strand, within RR42_RS02460 at 554.378 kb on - strand, within RR42_RS02460 at 554.378 kb on - strand, within RR42_RS02460 at 554.410 kb on + strand, within RR42_RS02460 at 554.411 kb on - strand, within RR42_RS02460 at 554.498 kb on - strand, within RR42_RS02460 at 554.559 kb on + strand, within RR42_RS02460 at 554.605 kb on + strand, within RR42_RS02460 at 554.605 kb on + strand, within RR42_RS02460 at 554.605 kb on + strand, within RR42_RS02460 at 554.605 kb on + strand, within RR42_RS02460 at 554.680 kb on + strand, within RR42_RS02460 at 554.681 kb on - strand, within RR42_RS02460 at 554.687 kb on + strand at 554.688 kb on - strand at 554.875 kb on + strand at 554.918 kb on - strand at 554.919 kb on + strand at 554.990 kb on + strand at 554.991 kb on - strand at 555.433 kb on + strand, within RR42_RS02465 at 555.433 kb on + strand, within RR42_RS02465 at 555.433 kb on + strand, within RR42_RS02465 at 555.433 kb on + strand, within RR42_RS02465 at 555.433 kb on + strand, within RR42_RS02465 at 555.434 kb on - strand, within RR42_RS02465 at 555.434 kb on - strand, within RR42_RS02465 at 555.516 kb on + strand, within RR42_RS02465 at 555.516 kb on + strand, within RR42_RS02465 at 555.598 kb on + strand, within RR42_RS02465 at 555.623 kb on - strand, within RR42_RS02465 at 555.623 kb on - strand, within RR42_RS02465 at 555.939 kb on + strand at 555.964 kb on - strand at 555.964 kb on - strand at 555.976 kb on + strand at 556.204 kb on + strand, within RR42_RS02470 at 556.204 kb on + strand, within RR42_RS02470 at 556.322 kb on - strand, within RR42_RS02470 at 556.322 kb on - strand, within RR42_RS02470 at 556.439 kb on + strand at 556.439 kb on + strand at 556.461 kb on + strand at 556.462 kb on - strand at 556.632 kb on + strand, within RR42_RS02475 at 556.632 kb on + strand, within RR42_RS02475 at 556.633 kb on - strand, within RR42_RS02475 at 556.684 kb on - strand, within RR42_RS02475 at 556.684 kb on - strand, within RR42_RS02475 at 556.802 kb on + strand, within RR42_RS02475
Per-strain Table
Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate remove 554,199 + RR42_RS02460 0.36 -0.8 554,199 + RR42_RS02460 0.36 -1.0 554,200 - RR42_RS02460 0.36 +1.0 554,200 - RR42_RS02460 0.36 -0.2 554,347 + RR42_RS02460 0.52 -0.3 554,378 - RR42_RS02460 0.56 -2.0 554,378 - RR42_RS02460 0.56 -0.2 554,378 - RR42_RS02460 0.56 +0.4 554,410 + RR42_RS02460 0.59 +0.4 554,411 - RR42_RS02460 0.59 -0.0 554,498 - RR42_RS02460 0.69 -1.3 554,559 + RR42_RS02460 0.76 -0.2 554,605 + RR42_RS02460 0.81 +0.3 554,605 + RR42_RS02460 0.81 -1.3 554,605 + RR42_RS02460 0.81 -0.0 554,605 + RR42_RS02460 0.81 +0.2 554,680 + RR42_RS02460 0.89 -0.8 554,681 - RR42_RS02460 0.89 -0.6 554,687 + -0.4 554,688 - +0.5 554,875 + +2.0 554,918 - +1.4 554,919 + -0.5 554,990 + +0.2 554,991 - -0.3 555,433 + RR42_RS02465 0.51 +0.9 555,433 + RR42_RS02465 0.51 -0.5 555,433 + RR42_RS02465 0.51 +1.2 555,433 + RR42_RS02465 0.51 -0.6 555,433 + RR42_RS02465 0.51 +0.2 555,434 - RR42_RS02465 0.51 +0.8 555,434 - RR42_RS02465 0.51 +0.0 555,516 + RR42_RS02465 0.61 -1.1 555,516 + RR42_RS02465 0.61 +0.6 555,598 + RR42_RS02465 0.70 +0.3 555,623 - RR42_RS02465 0.73 -0.6 555,623 - RR42_RS02465 0.73 -0.2 555,939 + +0.2 555,964 - -1.3 555,964 - +0.9 555,976 + +0.4 556,204 + RR42_RS02470 0.49 +0.1 556,204 + RR42_RS02470 0.49 +1.5 556,322 - RR42_RS02470 0.74 -0.3 556,322 - RR42_RS02470 0.74 +0.2 556,439 + -0.1 556,439 + +0.2 556,461 + +1.0 556,462 - -0.3 556,632 + RR42_RS02475 0.24 +0.8 556,632 + RR42_RS02475 0.24 -0.3 556,633 - RR42_RS02475 0.24 +2.0 556,684 - RR42_RS02475 0.31 +0.4 556,684 - RR42_RS02475 0.31 +1.0 556,802 + RR42_RS02475 0.46 +0.7
Or see this region's nucleotide sequence