Experiment: exometabolites; 10% oxygen; 5 mM nitrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01555 and RR42_RS01560 are separated by 235 nucleotides RR42_RS01560 and RR42_RS01565 are separated by 362 nucleotides RR42_RS01565 and RR42_RS01570 are separated by 39 nucleotides
RR42_RS01555: RR42_RS01555 - aminopeptidase, at 349,421 to 350,611
_RS01555
RR42_RS01560: RR42_RS01560 - diguanylate cyclase, at 350,847 to 352,628
_RS01560
RR42_RS01565: RR42_RS01565 - hypothetical protein, at 352,991 to 353,563
_RS01565
RR42_RS01570: RR42_RS01570 - GntR family transcriptional regulator, at 353,603 to 355,120
_RS01570
Position (kb) 350
351
352
353 Strain fitness (log2 ratio) -2
-1
0
1 at 350.202 kb on - strand, within RR42_RS01555 at 350.204 kb on + strand, within RR42_RS01555 at 350.204 kb on + strand, within RR42_RS01555 at 350.205 kb on - strand, within RR42_RS01555 at 350.205 kb on - strand, within RR42_RS01555 at 350.205 kb on - strand, within RR42_RS01555 at 350.205 kb on - strand, within RR42_RS01555 at 350.205 kb on - strand, within RR42_RS01555 at 350.265 kb on - strand, within RR42_RS01555 at 350.381 kb on + strand, within RR42_RS01555 at 350.382 kb on - strand, within RR42_RS01555 at 350.382 kb on - strand, within RR42_RS01555 at 350.382 kb on - strand, within RR42_RS01555 at 350.501 kb on + strand at 350.501 kb on + strand at 350.501 kb on + strand at 350.501 kb on + strand at 350.501 kb on + strand at 350.501 kb on + strand at 350.501 kb on + strand at 350.501 kb on + strand at 350.501 kb on + strand at 350.502 kb on - strand at 350.502 kb on - strand at 350.502 kb on - strand at 350.502 kb on - strand at 350.502 kb on - strand at 350.502 kb on - strand at 350.502 kb on - strand at 350.502 kb on - strand at 350.508 kb on - strand at 350.664 kb on + strand at 350.665 kb on - strand at 350.680 kb on + strand at 350.681 kb on - strand at 351.099 kb on + strand, within RR42_RS01560 at 351.102 kb on + strand, within RR42_RS01560 at 351.157 kb on - strand, within RR42_RS01560 at 351.159 kb on + strand, within RR42_RS01560 at 351.159 kb on + strand, within RR42_RS01560 at 351.159 kb on + strand, within RR42_RS01560 at 351.159 kb on + strand, within RR42_RS01560 at 351.159 kb on + strand, within RR42_RS01560 at 351.159 kb on + strand, within RR42_RS01560 at 351.159 kb on + strand, within RR42_RS01560 at 351.159 kb on + strand, within RR42_RS01560 at 351.159 kb on + strand, within RR42_RS01560 at 351.159 kb on + strand, within RR42_RS01560 at 351.159 kb on + strand, within RR42_RS01560 at 351.159 kb on + strand, within RR42_RS01560 at 351.159 kb on + strand, within RR42_RS01560 at 351.160 kb on - strand, within RR42_RS01560 at 351.160 kb on - strand, within RR42_RS01560 at 351.160 kb on - strand, within RR42_RS01560 at 351.160 kb on - strand, within RR42_RS01560 at 351.703 kb on + strand, within RR42_RS01560 at 351.774 kb on + strand, within RR42_RS01560 at 351.774 kb on + strand, within RR42_RS01560 at 351.774 kb on + strand, within RR42_RS01560 at 351.774 kb on + strand, within RR42_RS01560 at 351.775 kb on - strand, within RR42_RS01560 at 351.775 kb on - strand, within RR42_RS01560 at 351.775 kb on - strand, within RR42_RS01560 at 351.775 kb on - strand, within RR42_RS01560 at 351.775 kb on - strand, within RR42_RS01560 at 352.081 kb on + strand, within RR42_RS01560 at 352.082 kb on - strand, within RR42_RS01560 at 352.082 kb on - strand, within RR42_RS01560 at 352.082 kb on - strand, within RR42_RS01560 at 352.082 kb on - strand, within RR42_RS01560 at 352.347 kb on + strand, within RR42_RS01560 at 352.348 kb on - strand, within RR42_RS01560 at 352.551 kb on + strand at 352.552 kb on - strand at 352.685 kb on + strand at 352.685 kb on + strand at 352.686 kb on - strand at 352.736 kb on + strand at 352.737 kb on - strand at 352.754 kb on + strand at 352.765 kb on - strand at 352.769 kb on - strand at 352.821 kb on + strand at 352.821 kb on + strand at 352.822 kb on - strand at 352.901 kb on - strand at 352.968 kb on + strand at 352.968 kb on + strand at 352.969 kb on - strand at 352.969 kb on - strand at 352.969 kb on - strand at 352.969 kb on - strand at 352.996 kb on + strand at 352.997 kb on - strand at 353.034 kb on + strand at 353.035 kb on + strand at 353.035 kb on + strand at 353.035 kb on + strand at 353.035 kb on + strand at 353.035 kb on + strand at 353.035 kb on + strand at 353.035 kb on + strand at 353.035 kb on + strand at 353.035 kb on + strand at 353.036 kb on - strand at 353.036 kb on - strand at 353.036 kb on - strand at 353.036 kb on - strand at 353.036 kb on - strand at 353.036 kb on - strand at 353.036 kb on - strand at 353.036 kb on - strand at 353.144 kb on + strand, within RR42_RS01565 at 353.144 kb on + strand, within RR42_RS01565 at 353.144 kb on + strand, within RR42_RS01565 at 353.145 kb on - strand, within RR42_RS01565 at 353.145 kb on - strand, within RR42_RS01565 at 353.255 kb on - strand, within RR42_RS01565 at 353.371 kb on + strand, within RR42_RS01565 at 353.372 kb on - strand, within RR42_RS01565 at 353.372 kb on - strand, within RR42_RS01565 at 353.480 kb on + strand, within RR42_RS01565 at 353.543 kb on + strand at 353.544 kb on - strand at 353.544 kb on - strand at 353.544 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate remove 350,202 - RR42_RS01555 0.66 +1.2 350,204 + RR42_RS01555 0.66 +0.1 350,204 + RR42_RS01555 0.66 +0.2 350,205 - RR42_RS01555 0.66 +0.2 350,205 - RR42_RS01555 0.66 -0.8 350,205 - RR42_RS01555 0.66 -0.6 350,205 - RR42_RS01555 0.66 -0.1 350,205 - RR42_RS01555 0.66 +1.6 350,265 - RR42_RS01555 0.71 +0.8 350,381 + RR42_RS01555 0.81 -0.9 350,382 - RR42_RS01555 0.81 -1.0 350,382 - RR42_RS01555 0.81 +0.8 350,382 - RR42_RS01555 0.81 -0.8 350,501 + +0.4 350,501 + -1.1 350,501 + +0.8 350,501 + -0.4 350,501 + -0.4 350,501 + -0.1 350,501 + -0.6 350,501 + +0.2 350,501 + -0.8 350,502 - -0.2 350,502 - -0.8 350,502 - -0.9 350,502 - -0.0 350,502 - +1.0 350,502 - -1.7 350,502 - +1.6 350,502 - -0.1 350,508 - -0.5 350,664 + -0.1 350,665 - +0.2 350,680 + +0.1 350,681 - +0.5 351,099 + RR42_RS01560 0.14 -0.1 351,102 + RR42_RS01560 0.14 +0.2 351,157 - RR42_RS01560 0.17 +0.7 351,159 + RR42_RS01560 0.18 +0.3 351,159 + RR42_RS01560 0.18 +0.4 351,159 + RR42_RS01560 0.18 -0.2 351,159 + RR42_RS01560 0.18 -0.2 351,159 + RR42_RS01560 0.18 +0.4 351,159 + RR42_RS01560 0.18 -0.6 351,159 + RR42_RS01560 0.18 -1.1 351,159 + RR42_RS01560 0.18 -1.9 351,159 + RR42_RS01560 0.18 +0.2 351,159 + RR42_RS01560 0.18 -1.2 351,159 + RR42_RS01560 0.18 -1.3 351,159 + RR42_RS01560 0.18 +0.6 351,159 + RR42_RS01560 0.18 +0.5 351,160 - RR42_RS01560 0.18 -0.1 351,160 - RR42_RS01560 0.18 +1.2 351,160 - RR42_RS01560 0.18 -0.1 351,160 - RR42_RS01560 0.18 +0.1 351,703 + RR42_RS01560 0.48 -0.4 351,774 + RR42_RS01560 0.52 -0.5 351,774 + RR42_RS01560 0.52 -1.0 351,774 + RR42_RS01560 0.52 +0.1 351,774 + RR42_RS01560 0.52 +0.0 351,775 - RR42_RS01560 0.52 +0.4 351,775 - RR42_RS01560 0.52 -0.2 351,775 - RR42_RS01560 0.52 -0.6 351,775 - RR42_RS01560 0.52 +0.5 351,775 - RR42_RS01560 0.52 -0.7 352,081 + RR42_RS01560 0.69 -0.6 352,082 - RR42_RS01560 0.69 -1.2 352,082 - RR42_RS01560 0.69 -0.5 352,082 - RR42_RS01560 0.69 -1.9 352,082 - RR42_RS01560 0.69 +0.4 352,347 + RR42_RS01560 0.84 -0.8 352,348 - RR42_RS01560 0.84 -0.3 352,551 + -0.6 352,552 - +0.2 352,685 + +0.4 352,685 + -0.2 352,686 - -0.4 352,736 + +0.0 352,737 - +0.1 352,754 + -0.7 352,765 - +0.2 352,769 - -0.4 352,821 + -1.5 352,821 + -0.7 352,822 - +0.0 352,901 - -1.4 352,968 + +0.8 352,968 + +1.2 352,969 - -0.4 352,969 - -0.1 352,969 - -0.9 352,969 - -0.9 352,996 + -0.2 352,997 - +0.1 353,034 + +0.3 353,035 + -0.2 353,035 + -0.3 353,035 + -1.6 353,035 + -0.3 353,035 + -0.4 353,035 + -1.4 353,035 + -0.5 353,035 + -0.3 353,035 + -2.1 353,036 - +0.0 353,036 - -2.0 353,036 - -1.5 353,036 - -0.2 353,036 - -0.2 353,036 - +0.4 353,036 - +0.4 353,036 - +0.1 353,144 + RR42_RS01565 0.27 -0.6 353,144 + RR42_RS01565 0.27 -0.6 353,144 + RR42_RS01565 0.27 -0.6 353,145 - RR42_RS01565 0.27 -0.7 353,145 - RR42_RS01565 0.27 -0.6 353,255 - RR42_RS01565 0.46 -1.5 353,371 + RR42_RS01565 0.66 -0.3 353,372 - RR42_RS01565 0.66 +0.7 353,372 - RR42_RS01565 0.66 -1.6 353,480 + RR42_RS01565 0.85 -0.0 353,543 + +0.4 353,544 - +0.2 353,544 - -0.5 353,544 - +0.0
Or see this region's nucleotide sequence