Experiment: exometabolites; 10% oxygen; 5 mM nitrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01055 and RR42_RS01060 are separated by 242 nucleotides RR42_RS01060 and RR42_RS01065 are separated by 92 nucleotides RR42_RS01065 and RR42_RS01070 are separated by 79 nucleotides RR42_RS01070 and RR42_RS01075 are separated by 294 nucleotides
RR42_RS01055: RR42_RS01055 - ABC transporter substrate-binding protein, at 248,416 to 249,402
_RS01055
RR42_RS01060: RR42_RS01060 - peptidase, at 249,645 to 250,181
_RS01060
RR42_RS01065: RR42_RS01065 - ATP-dependent protease ATP-binding subunit HslU, at 250,274 to 251,605
_RS01065
RR42_RS01070: RR42_RS01070 - nuclear export factor GLE1, at 251,685 to 252,197
_RS01070
RR42_RS01075: RR42_RS01075 - hypothetical protein, at 252,492 to 253,073
_RS01075
Position (kb) 250
251
252 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 249.391 kb on + strand at 249.392 kb on - strand at 249.524 kb on + strand at 249.524 kb on + strand at 249.524 kb on + strand at 249.524 kb on + strand at 249.524 kb on + strand at 249.525 kb on - strand at 249.525 kb on - strand at 249.525 kb on - strand at 249.525 kb on - strand at 249.525 kb on - strand at 249.525 kb on - strand at 249.525 kb on - strand at 249.525 kb on - strand at 249.526 kb on + strand at 249.526 kb on + strand at 249.526 kb on + strand at 249.527 kb on - strand at 249.527 kb on - strand at 249.527 kb on - strand at 249.527 kb on - strand at 249.527 kb on - strand at 249.614 kb on + strand at 249.614 kb on + strand at 249.614 kb on + strand at 249.614 kb on + strand at 249.614 kb on + strand at 249.614 kb on + strand at 249.654 kb on + strand at 249.654 kb on + strand at 249.654 kb on + strand at 249.654 kb on + strand at 249.655 kb on - strand at 249.655 kb on - strand at 249.665 kb on + strand at 249.665 kb on + strand at 249.665 kb on + strand at 249.666 kb on - strand at 249.666 kb on - strand at 249.666 kb on - strand at 249.734 kb on + strand, within RR42_RS01060 at 249.734 kb on + strand, within RR42_RS01060 at 249.735 kb on - strand, within RR42_RS01060 at 249.735 kb on - strand, within RR42_RS01060 at 249.735 kb on - strand, within RR42_RS01060 at 249.735 kb on - strand, within RR42_RS01060 at 249.735 kb on - strand, within RR42_RS01060 at 249.774 kb on + strand, within RR42_RS01060 at 249.774 kb on + strand, within RR42_RS01060 at 249.774 kb on + strand, within RR42_RS01060 at 249.775 kb on - strand, within RR42_RS01060 at 249.787 kb on + strand, within RR42_RS01060 at 249.788 kb on - strand, within RR42_RS01060 at 249.788 kb on - strand, within RR42_RS01060 at 249.788 kb on - strand, within RR42_RS01060 at 249.861 kb on + strand, within RR42_RS01060 at 249.861 kb on + strand, within RR42_RS01060 at 249.861 kb on + strand, within RR42_RS01060 at 249.861 kb on + strand, within RR42_RS01060 at 250.044 kb on + strand, within RR42_RS01060 at 250.044 kb on + strand, within RR42_RS01060 at 250.045 kb on - strand, within RR42_RS01060 at 250.080 kb on - strand, within RR42_RS01060 at 250.143 kb on + strand at 250.143 kb on + strand at 250.143 kb on + strand at 250.144 kb on - strand at 250.144 kb on - strand at 250.270 kb on + strand at 250.282 kb on + strand at 250.282 kb on + strand at 250.282 kb on + strand at 250.283 kb on - strand at 250.547 kb on + strand, within RR42_RS01065 at 250.547 kb on + strand, within RR42_RS01065 at 250.548 kb on - strand, within RR42_RS01065 at 250.548 kb on - strand, within RR42_RS01065 at 250.548 kb on - strand, within RR42_RS01065 at 250.548 kb on - strand, within RR42_RS01065 at 251.153 kb on + strand, within RR42_RS01065 at 251.153 kb on + strand, within RR42_RS01065 at 251.154 kb on - strand, within RR42_RS01065 at 251.154 kb on - strand, within RR42_RS01065 at 251.154 kb on - strand, within RR42_RS01065 at 251.336 kb on + strand, within RR42_RS01065 at 251.336 kb on + strand, within RR42_RS01065 at 251.337 kb on - strand, within RR42_RS01065 at 251.337 kb on - strand, within RR42_RS01065 at 251.459 kb on + strand, within RR42_RS01065 at 251.459 kb on + strand, within RR42_RS01065 at 251.459 kb on + strand, within RR42_RS01065 at 251.460 kb on - strand, within RR42_RS01065 at 251.460 kb on - strand, within RR42_RS01065 at 251.543 kb on + strand at 251.543 kb on + strand at 251.544 kb on - strand at 251.594 kb on + strand at 251.594 kb on + strand at 251.603 kb on + strand at 251.603 kb on + strand at 251.833 kb on + strand, within RR42_RS01070 at 251.833 kb on + strand, within RR42_RS01070 at 251.834 kb on - strand, within RR42_RS01070 at 251.962 kb on + strand, within RR42_RS01070 at 251.962 kb on + strand, within RR42_RS01070 at 251.962 kb on + strand, within RR42_RS01070 at 251.963 kb on - strand, within RR42_RS01070 at 252.115 kb on + strand, within RR42_RS01070 at 252.115 kb on + strand, within RR42_RS01070 at 252.115 kb on + strand, within RR42_RS01070 at 252.266 kb on - strand at 252.393 kb on - strand at 252.393 kb on - strand at 252.399 kb on + strand at 252.399 kb on + strand at 252.400 kb on - strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.594 kb on + strand, within RR42_RS01075 at 252.595 kb on - strand, within RR42_RS01075
Per-strain Table
Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate remove 249,391 + -0.7 249,392 - +0.0 249,524 + -0.6 249,524 + -1.0 249,524 + -0.3 249,524 + +1.1 249,524 + +0.5 249,525 - +0.3 249,525 - -0.5 249,525 - -0.6 249,525 - -0.1 249,525 - -0.2 249,525 - +0.9 249,525 - +0.3 249,525 - -0.5 249,526 + -0.2 249,526 + -0.3 249,526 + -0.5 249,527 - -0.3 249,527 - +1.0 249,527 - +0.4 249,527 - -1.0 249,527 - +0.5 249,614 + +0.6 249,614 + +1.0 249,614 + -1.6 249,614 + -0.0 249,614 + -1.0 249,614 + +0.4 249,654 + +2.3 249,654 + +2.0 249,654 + -0.0 249,654 + +2.0 249,655 - -0.8 249,655 - +1.3 249,665 + +2.0 249,665 + +3.0 249,665 + +2.0 249,666 - -0.0 249,666 - +2.0 249,666 - +0.7 249,734 + RR42_RS01060 0.17 -0.2 249,734 + RR42_RS01060 0.17 +2.0 249,735 - RR42_RS01060 0.17 +1.7 249,735 - RR42_RS01060 0.17 +1.5 249,735 - RR42_RS01060 0.17 -0.4 249,735 - RR42_RS01060 0.17 +1.0 249,735 - RR42_RS01060 0.17 -1.0 249,774 + RR42_RS01060 0.24 -0.8 249,774 + RR42_RS01060 0.24 -0.2 249,774 + RR42_RS01060 0.24 +1.0 249,775 - RR42_RS01060 0.24 +1.6 249,787 + RR42_RS01060 0.26 +1.6 249,788 - RR42_RS01060 0.27 +1.0 249,788 - RR42_RS01060 0.27 -0.6 249,788 - RR42_RS01060 0.27 -0.9 249,861 + RR42_RS01060 0.40 -0.8 249,861 + RR42_RS01060 0.40 +0.1 249,861 + RR42_RS01060 0.40 +0.2 249,861 + RR42_RS01060 0.40 +0.4 250,044 + RR42_RS01060 0.74 -0.3 250,044 + RR42_RS01060 0.74 +1.0 250,045 - RR42_RS01060 0.74 +1.0 250,080 - RR42_RS01060 0.81 -0.6 250,143 + +0.4 250,143 + +0.4 250,143 + +0.4 250,144 - -1.0 250,144 - +2.0 250,270 + +0.4 250,282 + +1.0 250,282 + +2.4 250,282 + +3.0 250,283 - +2.0 250,547 + RR42_RS01065 0.20 +0.4 250,547 + RR42_RS01065 0.20 -0.6 250,548 - RR42_RS01065 0.21 -1.1 250,548 - RR42_RS01065 0.21 -0.3 250,548 - RR42_RS01065 0.21 +1.0 250,548 - RR42_RS01065 0.21 +0.4 251,153 + RR42_RS01065 0.66 -0.0 251,153 + RR42_RS01065 0.66 +1.0 251,154 - RR42_RS01065 0.66 +1.0 251,154 - RR42_RS01065 0.66 +0.7 251,154 - RR42_RS01065 0.66 +0.4 251,336 + RR42_RS01065 0.80 -0.0 251,336 + RR42_RS01065 0.80 +2.0 251,337 - RR42_RS01065 0.80 -0.0 251,337 - RR42_RS01065 0.80 +2.0 251,459 + RR42_RS01065 0.89 -1.5 251,459 + RR42_RS01065 0.89 -1.0 251,459 + RR42_RS01065 0.89 +1.0 251,460 - RR42_RS01065 0.89 -1.5 251,460 - RR42_RS01065 0.89 +2.0 251,543 + -0.3 251,543 + +0.4 251,544 - +1.0 251,594 + +2.0 251,594 + -0.0 251,603 + +2.2 251,603 + -0.3 251,833 + RR42_RS01070 0.29 -0.1 251,833 + RR42_RS01070 0.29 +0.1 251,834 - RR42_RS01070 0.29 +0.2 251,962 + RR42_RS01070 0.54 -0.7 251,962 + RR42_RS01070 0.54 -1.0 251,962 + RR42_RS01070 0.54 -0.3 251,963 - RR42_RS01070 0.54 -0.3 252,115 + RR42_RS01070 0.84 +1.2 252,115 + RR42_RS01070 0.84 +0.7 252,115 + RR42_RS01070 0.84 -0.9 252,266 - -0.5 252,393 - -0.0 252,393 - +0.3 252,399 + +0.1 252,399 + +0.5 252,400 - -0.1 252,403 + -0.5 252,403 + -0.1 252,403 + +0.3 252,403 + +0.3 252,403 + -0.9 252,403 + +0.1 252,403 + -0.8 252,403 + -0.6 252,403 + -0.1 252,404 - +0.4 252,404 - -1.1 252,404 - +0.9 252,404 - -0.6 252,404 - +0.6 252,404 - -1.1 252,404 - +0.3 252,404 - -0.6 252,594 + RR42_RS01075 0.18 +0.3 252,595 - RR42_RS01075 0.18 -2.6
Or see this region's nucleotide sequence