Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20095

Experiment: diet=HighFatHighSugar; sample=FecalPellet; mouse12; day2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=HighFatHighSugar; sample=FecalPellet; mouse12; day2
2,307,551	-		BBR_RS20085	0.37	-1.3
2,307,551	-		BBR_RS20085	0.37	-1.4
2,307,551	-		BBR_RS20085	0.37	-1.9
2,307,553	+		BBR_RS20085	0.37	-1.2
2,307,556	-		BBR_RS20085	0.37	-1.7
2,307,561	-		BBR_RS20085	0.38	-0.2
2,307,561	-		BBR_RS20085	0.38	-2.5
2,307,578	-		BBR_RS20085	0.40	+1.0
2,307,598	+		BBR_RS20085	0.43	-2.2
2,307,598	+		BBR_RS20085	0.43	-2.1
2,307,598	+		BBR_RS20085	0.43	+0.3
2,307,598	+		BBR_RS20085	0.43	+0.8
2,307,600	-		BBR_RS20085	0.43	-1.4
2,307,600	-		BBR_RS20085	0.43	-1.1
2,307,606	-		BBR_RS20085	0.44	+1.3
2,307,606	-		BBR_RS20085	0.44	+0.1
2,307,628	+		BBR_RS20085	0.47	-2.5
2,307,628	+		BBR_RS20085	0.47	-1.4
2,307,628	+		BBR_RS20085	0.47	-1.3
2,307,630	+		BBR_RS20085	0.48	-1.9
2,307,630	+		BBR_RS20085	0.48	+1.1
2,307,636	-		BBR_RS20085	0.48	-2.3
2,307,636	-		BBR_RS20085	0.48	-0.9
2,307,636	-		BBR_RS20085	0.48	+0.7
2,307,636	-		BBR_RS20085	0.48	-1.8
2,307,638	-		BBR_RS20085	0.49	-0.3
2,307,638	-		BBR_RS20085	0.49	-1.3
2,307,638	-		BBR_RS20085	0.49	-1.3
2,307,641	-		BBR_RS20085	0.49	-1.4
2,307,656	+		BBR_RS20085	0.51	-2.5
2,307,656	-		BBR_RS20085	0.51	-0.6
2,307,661	+		BBR_RS20085	0.52	-0.4
2,307,664	-		BBR_RS20085	0.52	-1.1
2,307,666	-		BBR_RS20085	0.53	-2.2
2,307,666	-		BBR_RS20085	0.53	+1.2
2,307,666	-		BBR_RS20085	0.53	+0.7
2,307,667	+		BBR_RS20085	0.53	-1.2
2,307,667	+		BBR_RS20085	0.53	-1.4
2,307,668	+		BBR_RS20085	0.53	-0.2
2,307,674	+		BBR_RS20085	0.54	-2.0
2,307,686	+		BBR_RS20085	0.55	-0.8
2,307,691	+		BBR_RS20085	0.56	-0.2
2,307,694	-		BBR_RS20085	0.57	-2.1
2,307,694	-		BBR_RS20085	0.57	+2.1
2,307,694	-		BBR_RS20085	0.57	-0.5
2,307,708	+		BBR_RS20085	0.59	-0.2
2,307,717	+		BBR_RS20085	0.60	-2.7
2,307,717	+		BBR_RS20085	0.60	+1.0
2,307,717	+		BBR_RS20085	0.60	-0.6
2,307,727	+		BBR_RS20085	0.61	+1.2
2,307,727	+		BBR_RS20085	0.61	-0.6
2,307,732	-		BBR_RS20085	0.62	-3.2
2,307,735	-		BBR_RS20085	0.62	+0.7
2,307,735	-		BBR_RS20085	0.62	-2.6
2,307,735	-		BBR_RS20085	0.62	-1.6
2,307,736	-		BBR_RS20085	0.62	+2.6
2,307,762	+		BBR_RS20085	0.66	+0.9
2,307,762	+		BBR_RS20085	0.66	-1.6
2,307,771	+		BBR_RS20085	0.67	-2.9
2,307,782	+		BBR_RS20085	0.69	-0.2
2,307,801	-		BBR_RS20085	0.72	-1.2
2,307,801	-		BBR_RS20085	0.72	-3.2
2,307,802	-		BBR_RS20085	0.72	-1.6
2,307,814	-		BBR_RS20085	0.73	-3.1
2,307,820	-		BBR_RS20085	0.74	-3.3
2,307,845	-		BBR_RS20085	0.78	-0.7
2,307,862	+		BBR_RS20085	0.80	+0.1
2,307,862	-		BBR_RS20085	0.80	-1.0
2,307,864	+		BBR_RS20085	0.80	-2.6
2,307,864	+		BBR_RS20085	0.80	+0.1
2,307,864	+		BBR_RS20085	0.80	-1.7
2,307,867	+		BBR_RS20085	0.81	-0.8
2,307,871	-		BBR_RS20085	0.81	-4.0
2,307,871	-		BBR_RS20085	0.81	-3.2
2,307,871	-		BBR_RS20085	0.81	-2.6
2,307,903	-		BBR_RS20085	0.86	-2.2
2,307,944	-				-0.1
2,307,944	-				-1.4
2,307,973	+				-0.3
2,307,986	-				-2.0
2,308,001	+				-0.4
2,308,005	+				+0.1
2,308,005	-				-1.5
2,308,006	-				-0.2
2,308,008	+				+0.9
2,308,010	+				-0.1
2,308,015	+				-2.2
2,308,015	+				-1.6
2,308,015	+				-0.5
2,308,015	+				+0.7
2,308,015	+				-0.6
2,308,015	+				-3.3
2,308,015	+				+1.7
2,308,015	+				+0.7
2,308,015	+				-1.9
2,308,015	+				+0.0
2,308,015	+				-0.1
2,308,016	-				+0.5
2,308,018	+				-1.6
2,308,018	-				+0.6
2,308,018	-				+1.6
2,308,023	+				+0.3
2,308,023	-				+1.9
2,308,023	-				+0.5
2,308,023	-				+0.3
2,308,023	-				-0.5
2,308,023	-				+0.2
2,308,023	-				-1.0
2,308,036	+				-0.3
2,308,071	+				+0.6
2,308,072	+				-1.1
2,308,074	+				-0.9
2,308,080	-				+1.7
2,308,092	+				+0.6
2,308,092	+				+1.0
2,308,103	-				+0.9
2,308,129	+		BBR_RS20090	0.14	-0.7
2,308,129	+		BBR_RS20090	0.14	-1.4
2,308,129	+		BBR_RS20090	0.14	+1.7
2,308,132	+		BBR_RS20090	0.15	-1.1
2,308,137	-		BBR_RS20090	0.16	-0.1
2,308,137	-		BBR_RS20090	0.16	+0.3
2,308,144	+		BBR_RS20090	0.18	+0.1
2,308,144	+		BBR_RS20090	0.18	+1.1
2,308,145	+		BBR_RS20090	0.19	-0.4
2,308,174	+		BBR_RS20090	0.26	+1.0
2,308,179	+		BBR_RS20090	0.28	+0.0
2,308,182	-		BBR_RS20090	0.28	+1.0
2,308,185	+		BBR_RS20090	0.29	-0.9
2,308,193	+		BBR_RS20090	0.31	+0.1
2,308,193	+		BBR_RS20090	0.31	-1.6
2,308,207	+		BBR_RS20090	0.35	-2.6
2,308,207	+		BBR_RS20090	0.35	+0.2
2,308,222	+		BBR_RS20090	0.39	-0.6
2,308,228	+		BBR_RS20090	0.40	-1.0
2,308,230	-		BBR_RS20090	0.41	-2.1
2,308,230	-		BBR_RS20090	0.41	-2.0
2,308,230	-		BBR_RS20090	0.41	-2.4
2,308,257	+		BBR_RS20090	0.48	+0.9
2,308,257	+		BBR_RS20090	0.48	-1.1
2,308,265	-		BBR_RS20090	0.50	-1.9
2,308,267	+		BBR_RS20090	0.51	-0.5
2,308,267	+		BBR_RS20090	0.51	-0.4
2,308,275	-		BBR_RS20090	0.53	+0.5
2,308,275	-		BBR_RS20090	0.53	+1.7
2,308,275	-		BBR_RS20090	0.53	+1.3
2,308,280	+		BBR_RS20090	0.54	-0.5
2,308,299	+		BBR_RS20090	0.59	+0.3
2,308,307	-		BBR_RS20090	0.61	-0.1
2,308,307	-		BBR_RS20090	0.61	-1.6
2,308,314	-		BBR_RS20090	0.63	-1.7
2,308,324	+		BBR_RS20090	0.66	+0.1
2,308,324	+		BBR_RS20090	0.66	-0.2
2,308,324	+		BBR_RS20090	0.66	-0.3
2,308,324	+		BBR_RS20090	0.66	+0.0
2,308,330	-		BBR_RS20090	0.67	+1.5
2,308,330	-		BBR_RS20090	0.67	-2.0
2,308,332	-		BBR_RS20090	0.68	-2.1
2,308,332	-		BBR_RS20090	0.68	+1.4
2,308,332	-		BBR_RS20090	0.68	+1.9
2,308,332	-		BBR_RS20090	0.68	-0.6
2,308,338	-		BBR_RS20090	0.70	+0.2
2,308,384	+		BBR_RS20090	0.82	+0.4
2,308,394	+		BBR_RS20090	0.84	+0.7
2,308,414	-		BBR_RS20090	0.90	+1.0
2,308,448	-				+0.3
2,308,453	-				+1.7
2,308,462	-				-0.9
2,308,462	-				+1.3
2,308,486	+				-1.1
2,308,494	-				-3.3
2,308,494	-				-2.8
2,308,517	-				+2.7
2,308,522	+				+1.8
2,308,522	+				+0.8
2,308,530	-				+1.9
2,308,535	+				+0.6
2,308,543	-				+2.7
2,308,545	+				+0.7
2,308,545	+				+2.6
2,308,545	-				+2.0
2,308,553	-				+2.0
2,308,566	+				+1.8
2,308,566	+				+2.7
2,308,574	-				+0.6
2,308,574	-				-1.7
2,308,575	-				+1.9
2,308,609	-				+1.1
2,308,630	-		BBR_RS20095	0.11	+2.0
2,308,639	-		BBR_RS20095	0.12	+2.5
2,308,641	+		BBR_RS20095	0.12	+0.7
2,308,656	-		BBR_RS20095	0.14	+1.7
2,308,661	+		BBR_RS20095	0.15	+0.8
2,308,674	-		BBR_RS20095	0.16	+2.5
2,308,682	-		BBR_RS20095	0.17	+0.7
2,308,698	-		BBR_RS20095	0.20	+1.2
2,308,719	-		BBR_RS20095	0.22	+0.8
2,308,724	+		BBR_RS20095	0.23	+2.1
2,308,726	-		BBR_RS20095	0.23	+1.6
2,308,751	+		BBR_RS20095	0.26	+1.1
2,308,751	+		BBR_RS20095	0.26	+0.6
2,308,751	+		BBR_RS20095	0.26	+0.0
2,308,751	+		BBR_RS20095	0.26	+1.2
2,308,751	+		BBR_RS20095	0.26	+1.6
2,308,768	-		BBR_RS20095	0.29	+0.4
2,308,770	-		BBR_RS20095	0.29	+2.2
2,308,773	+		BBR_RS20095	0.29	+1.7
2,308,775	+		BBR_RS20095	0.30	+2.0
2,308,775	-		BBR_RS20095	0.30	+1.9
2,308,778	-		BBR_RS20095	0.30	+2.1
2,308,783	-		BBR_RS20095	0.31	+2.0
2,308,783	-		BBR_RS20095	0.31	+2.3
2,308,783	-		BBR_RS20095	0.31	+2.4
2,308,784	-		BBR_RS20095	0.31	+2.0
2,308,799	+		BBR_RS20095	0.33	+1.1
2,308,799	+		BBR_RS20095	0.33	+2.3
2,308,807	-		BBR_RS20095	0.34	+3.0
2,308,807	-		BBR_RS20095	0.34	+1.5
2,308,831	+		BBR_RS20095	0.37	+2.3
2,308,831	-		BBR_RS20095	0.37	+2.0
2,308,839	-		BBR_RS20095	0.38	+2.7
2,308,839	-		BBR_RS20095	0.38	+1.5
2,308,839	-		BBR_RS20095	0.38	+1.5
2,308,846	-		BBR_RS20095	0.39	+1.2
2,308,860	+		BBR_RS20095	0.41	+2.7
2,308,862	+		BBR_RS20095	0.41	+2.6
2,308,870	+		BBR_RS20095	0.42	+1.8
2,308,882	+		BBR_RS20095	0.43	+2.6
2,308,882	+		BBR_RS20095	0.43	+1.1
2,308,888	+		BBR_RS20095	0.44	+1.5
2,308,892	+		BBR_RS20095	0.45	+1.0
2,308,895	-		BBR_RS20095	0.45	+1.6
2,308,900	-		BBR_RS20095	0.46	+1.5
2,308,902	+		BBR_RS20095	0.46	+2.5
2,308,910	-		BBR_RS20095	0.47	+1.8
2,308,936	+		BBR_RS20095	0.51	+0.6
2,308,936	+		BBR_RS20095	0.51	+1.2
2,308,952	-		BBR_RS20095	0.53	+0.7
2,308,973	+		BBR_RS20095	0.55	+1.5
2,308,984	+		BBR_RS20095	0.57	-0.0
2,308,984	+		BBR_RS20095	0.57	+1.3
2,308,984	+		BBR_RS20095	0.57	+2.2
2,308,984	+		BBR_RS20095	0.57	+1.5
2,308,992	-		BBR_RS20095	0.58	+1.4
2,308,994	+		BBR_RS20095	0.58	+1.6
2,309,003	+		BBR_RS20095	0.59	+1.2
2,309,016	+		BBR_RS20095	0.61	+2.1
2,309,024	-		BBR_RS20095	0.62	+1.6
2,309,024	-		BBR_RS20095	0.62	+1.8
2,309,026	+		BBR_RS20095	0.62	+0.9
2,309,029	-		BBR_RS20095	0.63	-1.6
2,309,029	-		BBR_RS20095	0.63	+1.7
2,309,031	+		BBR_RS20095	0.63	+2.0
2,309,034	-		BBR_RS20095	0.63	+1.4
2,309,036	+		BBR_RS20095	0.64	+2.1
2,309,038	+		BBR_RS20095	0.64	+3.1
2,309,044	-		BBR_RS20095	0.65	+2.7
2,309,046	-		BBR_RS20095	0.65	+1.9
2,309,048	+		BBR_RS20095	0.65	+2.7
2,309,056	-		BBR_RS20095	0.66	+2.3
2,309,056	-		BBR_RS20095	0.66	+1.5
2,309,056	-		BBR_RS20095	0.66	+0.9
2,309,058	+		BBR_RS20095	0.66	+2.4
2,309,058	+		BBR_RS20095	0.66	+1.5
2,309,066	-		BBR_RS20095	0.67	+2.8
2,309,080	+		BBR_RS20095	0.69	+2.6
2,309,080	+		BBR_RS20095	0.69	+1.9
2,309,086	-		BBR_RS20095	0.70	+1.4
2,309,094	+		BBR_RS20095	0.71	+1.6
2,309,104	+		BBR_RS20095	0.72	+1.5
2,309,114	+		BBR_RS20095	0.74	+2.5
2,309,114	+		BBR_RS20095	0.74	+1.7
2,309,114	+		BBR_RS20095	0.74	+1.5
2,309,114	+		BBR_RS20095	0.74	+1.4
2,309,122	-		BBR_RS20095	0.75	+1.7
2,309,157	+		BBR_RS20095	0.79	+2.4
2,309,170	+		BBR_RS20095	0.81	+1.6
2,309,170	+		BBR_RS20095	0.81	+1.9
2,309,180	+		BBR_RS20095	0.82	+0.9
2,309,180	+		BBR_RS20095	0.82	+1.8
2,309,188	-		BBR_RS20095	0.83	+2.8
2,309,188	-		BBR_RS20095	0.83	+1.7
2,309,196	-		BBR_RS20095	0.84	+2.4
2,309,215	-		BBR_RS20095	0.87	+2.1
2,309,224	-		BBR_RS20095	0.88	+2.4
2,309,271	+				+1.4
2,309,276	+				+1.5
2,309,289	+				+2.7
2,309,289	+				+1.8
2,309,297	-				-0.2
2,309,297	-				+1.2
2,309,316	+				+0.7
2,309,316	+				+1.9
2,309,316	+				-0.9
2,309,321	+				+0.7
2,309,321	+				-0.3
2,309,321	+				+1.0
2,309,324	-				-0.0
2,309,324	-				-0.2
2,309,326	+				+0.2
2,309,326	+				+1.5
2,309,327	-				-0.7
2,309,329	-				+1.7
2,309,329	-				-1.6
2,309,329	-				-1.7
2,309,333	+				+1.5
2,309,333	+				-3.1
2,309,339	-				+0.4
2,309,341	-				+0.9
2,309,341	-				+0.9
2,309,341	-				+0.8
2,309,381	+				+1.0
2,309,438	-				-0.4
2,309,439	-				-1.1
2,309,442	+				+0.7
2,309,449	-				+1.5
2,309,450	-				+0.6
2,309,454	+				+0.2
2,309,456	+				+1.5
2,309,456	+				+1.0
2,309,459	-				-0.2
2,309,464	+				+1.3
2,309,464	-				+0.4
2,309,499	+				-0.3
2,309,501	+				-2.8
2,309,509	-				-1.1
2,309,509	-				+2.1
2,309,557	-				+1.1
2,309,563	+				+0.5
2,309,568	+				-0.4
2,309,568	+				-1.5
2,309,568	+				+1.9
2,309,573	+				+0.7
2,309,576	-				+1.7
2,309,576	-				+0.7
2,309,591	+				+0.5
2,309,609	-				-1.8
2,309,609	-				-1.8
2,309,617	-				+0.1
2,309,660	+				+0.8
2,309,661	-				-0.1
2,309,661	-				+0.5
2,309,674	+				+1.3
2,309,674	+				-2.2
2,309,693	+				-1.2
2,309,706	-				-0.1
2,309,728	+				-0.2
2,309,730	-				-0.7
2,309,759	+		BBR_RS20100	0.10	+0.3
2,309,762	-		BBR_RS20100	0.10	-0.3
2,309,764	+		BBR_RS20100	0.10	+0.8
2,309,772	-		BBR_RS20100	0.11	+0.0
2,309,774	+		BBR_RS20100	0.11	-3.3
2,309,775	+		BBR_RS20100	0.11	-1.0
2,309,775	+		BBR_RS20100	0.11	+1.1
2,309,775	+		BBR_RS20100	0.11	+0.4
2,309,778	+		BBR_RS20100	0.11	+0.1
2,309,782	-		BBR_RS20100	0.11	+0.3
2,309,783	-		BBR_RS20100	0.11	+0.1
2,309,786	-		BBR_RS20100	0.11	-0.2
2,309,801	+		BBR_RS20100	0.12	-1.5
2,309,809	-		BBR_RS20100	0.12	+1.1
2,309,824	+		BBR_RS20100	0.12	+0.4
2,309,866	+		BBR_RS20100	0.14	+0.3
2,309,866	+		BBR_RS20100	0.14	+0.5
2,309,877	-		BBR_RS20100	0.14	+0.8
2,309,877	-		BBR_RS20100	0.14	-0.3
2,309,914	+		BBR_RS20100	0.16	+1.2
2,309,914	+		BBR_RS20100	0.16	+1.0
2,309,950	+		BBR_RS20100	0.17	+1.4
2,309,958	-		BBR_RS20100	0.17	-2.8
2,309,990	+		BBR_RS20100	0.19	+0.1
2,309,990	+		BBR_RS20100	0.19	-0.1
2,309,990	+		BBR_RS20100	0.19	-0.4
2,309,990	+		BBR_RS20100	0.19	-0.5
2,309,990	+		BBR_RS20100	0.19	+1.0
2,309,996	-		BBR_RS20100	0.19	-0.6
2,309,996	-		BBR_RS20100	0.19	-0.1
2,309,998	+		BBR_RS20100	0.19	+1.2
2,309,998	-		BBR_RS20100	0.19	+0.2
2,309,998	-		BBR_RS20100	0.19	+0.6
2,310,006	-		BBR_RS20100	0.19	-0.6
2,310,031	+		BBR_RS20100	0.20	+1.4
2,310,050	-		BBR_RS20100	0.21	+0.9
2,310,082	+		BBR_RS20100	0.22	+0.4
2,310,083	-		BBR_RS20100	0.22	+0.3
2,310,089	+		BBR_RS20100	0.22	+1.8
2,310,089	+		BBR_RS20100	0.22	+0.3
2,310,095	-		BBR_RS20100	0.22	+1.8
2,310,100	+		BBR_RS20100	0.23	+1.5
2,310,108	+		BBR_RS20100	0.23	+1.3
2,310,108	+		BBR_RS20100	0.23	+0.5
2,310,126	+		BBR_RS20100	0.23	-0.2
2,310,126	+		BBR_RS20100	0.23	+1.3
2,310,126	+		BBR_RS20100	0.23	+0.9
2,310,126	+		BBR_RS20100	0.23	+1.1
2,310,134	-		BBR_RS20100	0.24	+0.5
2,310,134	-		BBR_RS20100	0.24	-1.2
2,310,146	-		BBR_RS20100	0.24	+0.9
2,310,146	-		BBR_RS20100	0.24	-0.2
2,310,147	-		BBR_RS20100	0.24	-0.1
2,310,149	+		BBR_RS20100	0.24	+0.4
2,310,149	+		BBR_RS20100	0.24	-0.3
2,310,149	+		BBR_RS20100	0.24	-1.5
2,310,152	+		BBR_RS20100	0.24	-0.3
2,310,157	-		BBR_RS20100	0.25	+0.5
2,310,157	-		BBR_RS20100	0.25	-0.2
2,310,162	-		BBR_RS20100	0.25	-0.0
2,310,167	-		BBR_RS20100	0.25	+0.3
2,310,167	-		BBR_RS20100	0.25	-0.4
2,310,180	+		BBR_RS20100	0.25	-1.3
2,310,186	-		BBR_RS20100	0.26	+0.7
2,310,187	+		BBR_RS20100	0.26	+0.8
2,310,208	+		BBR_RS20100	0.26	+1.2
2,310,216	+		BBR_RS20100	0.27	-0.4
2,310,231	-		BBR_RS20100	0.27	+0.4
2,310,241	-		BBR_RS20100	0.28	+1.2
2,310,256	-		BBR_RS20100	0.28	+1.4
2,310,263	-		BBR_RS20100	0.28	-1.2
2,310,263	-		BBR_RS20100	0.28	+0.6
2,310,297	+		BBR_RS20100	0.30	+1.9
2,310,298	-		BBR_RS20100	0.30	-0.8
2,310,313	+		BBR_RS20100	0.30	+0.3
2,310,313	-		BBR_RS20100	0.30	+1.4
2,310,313	-		BBR_RS20100	0.30	+0.4