Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13065

Experiment: diet=HighFatHighSugar; sample=FecalPellet; mouse12; day2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13060 and BBR_RS13065 are separated by 15 nucleotidesBBR_RS13065 and BBR_RS13070 are separated by 244 nucleotides BBR_RS13060: BBR_RS13060 - amino acid ABC transporter permease, at 703,077 to 704,060 _RS13060 BBR_RS13065: BBR_RS13065 - amino acid ABC transporter ATP-binding protein, at 704,076 to 704,906 _RS13065 BBR_RS13070: BBR_RS13070 - glutamine--fructose-6-phosphate transaminase (isomerizing), at 705,151 to 707,043 _RS13070 Position (kb) 704 705Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 703.112 kb on - strandat 703.112 kb on - strandat 703.114 kb on + strandat 703.122 kb on - strandat 703.148 kb on - strandat 703.232 kb on - strand, within BBR_RS13060at 703.291 kb on + strand, within BBR_RS13060at 703.291 kb on + strand, within BBR_RS13060at 703.291 kb on + strand, within BBR_RS13060at 703.303 kb on - strand, within BBR_RS13060at 703.323 kb on + strand, within BBR_RS13060at 703.323 kb on + strand, within BBR_RS13060at 703.325 kb on - strand, within BBR_RS13060at 703.349 kb on - strand, within BBR_RS13060at 703.374 kb on + strand, within BBR_RS13060at 703.392 kb on - strand, within BBR_RS13060at 703.422 kb on + strand, within BBR_RS13060at 703.491 kb on + strand, within BBR_RS13060at 703.491 kb on + strand, within BBR_RS13060at 703.491 kb on + strand, within BBR_RS13060at 703.491 kb on + strand, within BBR_RS13060at 703.499 kb on - strand, within BBR_RS13060at 703.523 kb on + strand, within BBR_RS13060at 703.564 kb on + strand, within BBR_RS13060at 703.569 kb on + strand, within BBR_RS13060at 703.674 kb on + strand, within BBR_RS13060at 703.674 kb on + strand, within BBR_RS13060at 703.684 kb on + strand, within BBR_RS13060at 703.697 kb on + strand, within BBR_RS13060at 703.697 kb on + strand, within BBR_RS13060at 703.703 kb on + strand, within BBR_RS13060at 703.703 kb on + strand, within BBR_RS13060at 703.705 kb on - strand, within BBR_RS13060at 703.752 kb on + strand, within BBR_RS13060at 703.756 kb on + strand, within BBR_RS13060at 703.759 kb on - strand, within BBR_RS13060at 703.760 kb on - strand, within BBR_RS13060at 703.774 kb on + strand, within BBR_RS13060at 703.774 kb on + strand, within BBR_RS13060at 703.782 kb on - strand, within BBR_RS13060at 703.789 kb on + strand, within BBR_RS13060at 703.791 kb on - strand, within BBR_RS13060at 703.872 kb on - strand, within BBR_RS13060at 703.875 kb on + strand, within BBR_RS13060at 703.885 kb on + strand, within BBR_RS13060at 703.891 kb on + strand, within BBR_RS13060at 703.893 kb on - strand, within BBR_RS13060at 703.899 kb on - strand, within BBR_RS13060at 703.899 kb on - strand, within BBR_RS13060at 703.899 kb on - strand, within BBR_RS13060at 703.913 kb on + strand, within BBR_RS13060at 703.934 kb on + strand, within BBR_RS13060at 703.964 kb on + strandat 703.985 kb on + strandat 703.999 kb on - strandat 704.011 kb on - strandat 704.023 kb on + strandat 704.093 kb on + strandat 704.098 kb on + strandat 704.098 kb on + strandat 704.098 kb on + strandat 704.109 kb on + strandat 704.122 kb on + strandat 704.122 kb on - strandat 704.157 kb on + strandat 704.165 kb on + strand, within BBR_RS13065at 704.180 kb on - strand, within BBR_RS13065at 704.192 kb on + strand, within BBR_RS13065at 704.192 kb on + strand, within BBR_RS13065at 704.200 kb on - strand, within BBR_RS13065at 704.219 kb on + strand, within BBR_RS13065at 704.219 kb on + strand, within BBR_RS13065at 704.219 kb on + strand, within BBR_RS13065at 704.232 kb on - strand, within BBR_RS13065at 704.264 kb on + strand, within BBR_RS13065at 704.271 kb on + strand, within BBR_RS13065at 704.271 kb on + strand, within BBR_RS13065at 704.373 kb on + strand, within BBR_RS13065at 704.381 kb on - strand, within BBR_RS13065at 704.383 kb on + strand, within BBR_RS13065at 704.424 kb on + strand, within BBR_RS13065at 704.430 kb on + strand, within BBR_RS13065at 704.436 kb on - strand, within BBR_RS13065at 704.504 kb on + strand, within BBR_RS13065at 704.512 kb on - strand, within BBR_RS13065at 704.518 kb on - strand, within BBR_RS13065at 704.534 kb on + strand, within BBR_RS13065at 704.562 kb on - strand, within BBR_RS13065at 704.567 kb on - strand, within BBR_RS13065at 704.576 kb on + strand, within BBR_RS13065at 704.605 kb on + strand, within BBR_RS13065at 704.709 kb on + strand, within BBR_RS13065at 704.711 kb on + strand, within BBR_RS13065at 704.716 kb on + strand, within BBR_RS13065at 704.719 kb on - strand, within BBR_RS13065at 704.719 kb on - strand, within BBR_RS13065at 704.724 kb on - strand, within BBR_RS13065at 704.741 kb on + strand, within BBR_RS13065at 704.741 kb on + strand, within BBR_RS13065at 704.741 kb on + strand, within BBR_RS13065at 704.748 kb on + strand, within BBR_RS13065at 704.750 kb on - strand, within BBR_RS13065at 704.754 kb on + strand, within BBR_RS13065at 704.784 kb on - strand, within BBR_RS13065at 704.898 kb on + strandat 704.958 kb on + strandat 704.958 kb on + strandat 704.969 kb on + strandat 705.022 kb on + strandat 705.025 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=HighFatHighSugar; sample=FecalPellet; mouse12; day2
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703,112 - -1.3
703,112 - +0.2
703,114 + -1.5
703,122 - +1.2
703,148 - +0.5
703,232 - BBR_RS13060 0.16 +0.7
703,291 + BBR_RS13060 0.22 +0.7
703,291 + BBR_RS13060 0.22 -0.1
703,291 + BBR_RS13060 0.22 -0.3
703,303 - BBR_RS13060 0.23 -1.3
703,323 + BBR_RS13060 0.25 -2.9
703,323 + BBR_RS13060 0.25 +0.3
703,325 - BBR_RS13060 0.25 -1.3
703,349 - BBR_RS13060 0.28 -1.4
703,374 + BBR_RS13060 0.30 -1.7
703,392 - BBR_RS13060 0.32 -3.1
703,422 + BBR_RS13060 0.35 +0.5
703,491 + BBR_RS13060 0.42 -0.5
703,491 + BBR_RS13060 0.42 +0.0
703,491 + BBR_RS13060 0.42 +0.6
703,491 + BBR_RS13060 0.42 -1.5
703,499 - BBR_RS13060 0.43 -1.5
703,523 + BBR_RS13060 0.45 +1.3
703,564 + BBR_RS13060 0.49 +1.0
703,569 + BBR_RS13060 0.50 +0.2
703,674 + BBR_RS13060 0.61 +0.2
703,674 + BBR_RS13060 0.61 -0.9
703,684 + BBR_RS13060 0.62 +0.1
703,697 + BBR_RS13060 0.63 +0.1
703,697 + BBR_RS13060 0.63 -2.9
703,703 + BBR_RS13060 0.64 -2.2
703,703 + BBR_RS13060 0.64 -0.9
703,705 - BBR_RS13060 0.64 -0.8
703,752 + BBR_RS13060 0.69 -1.6
703,756 + BBR_RS13060 0.69 +0.7
703,759 - BBR_RS13060 0.69 -0.6
703,760 - BBR_RS13060 0.69 -0.6
703,774 + BBR_RS13060 0.71 -1.4
703,774 + BBR_RS13060 0.71 -0.6
703,782 - BBR_RS13060 0.72 +0.5
703,789 + BBR_RS13060 0.72 -1.6
703,791 - BBR_RS13060 0.73 -0.1
703,872 - BBR_RS13060 0.81 -1.1
703,875 + BBR_RS13060 0.81 -0.7
703,885 + BBR_RS13060 0.82 -1.0
703,891 + BBR_RS13060 0.83 -0.1
703,893 - BBR_RS13060 0.83 -1.3
703,899 - BBR_RS13060 0.84 +0.0
703,899 - BBR_RS13060 0.84 +1.5
703,899 - BBR_RS13060 0.84 +1.1
703,913 + BBR_RS13060 0.85 -2.1
703,934 + BBR_RS13060 0.87 -0.0
703,964 + -0.1
703,985 + +1.1
703,999 - -1.3
704,011 - -0.3
704,023 + +2.3
704,093 + -0.3
704,098 + +0.9
704,098 + +0.5
704,098 + -0.2
704,109 + -0.5
704,122 + +0.3
704,122 - +0.9
704,157 + +1.1
704,165 + BBR_RS13065 0.11 -0.5
704,180 - BBR_RS13065 0.13 -0.3
704,192 + BBR_RS13065 0.14 +2.0
704,192 + BBR_RS13065 0.14 +0.6
704,200 - BBR_RS13065 0.15 -1.3
704,219 + BBR_RS13065 0.17 -1.3
704,219 + BBR_RS13065 0.17 +0.4
704,219 + BBR_RS13065 0.17 +0.9
704,232 - BBR_RS13065 0.19 -0.5
704,264 + BBR_RS13065 0.23 -1.8
704,271 + BBR_RS13065 0.23 -1.2
704,271 + BBR_RS13065 0.23 -0.5
704,373 + BBR_RS13065 0.36 -3.0
704,381 - BBR_RS13065 0.37 +0.1
704,383 + BBR_RS13065 0.37 -1.0
704,424 + BBR_RS13065 0.42 -0.4
704,430 + BBR_RS13065 0.43 -0.5
704,436 - BBR_RS13065 0.43 -0.6
704,504 + BBR_RS13065 0.52 +0.9
704,512 - BBR_RS13065 0.52 -0.1
704,518 - BBR_RS13065 0.53 -0.5
704,534 + BBR_RS13065 0.55 +0.8
704,562 - BBR_RS13065 0.58 -0.7
704,567 - BBR_RS13065 0.59 -0.1
704,576 + BBR_RS13065 0.60 -0.1
704,605 + BBR_RS13065 0.64 -2.7
704,709 + BBR_RS13065 0.76 +0.2
704,711 + BBR_RS13065 0.76 +0.1
704,716 + BBR_RS13065 0.77 -0.4
704,719 - BBR_RS13065 0.77 +0.1
704,719 - BBR_RS13065 0.77 +0.9
704,724 - BBR_RS13065 0.78 -2.3
704,741 + BBR_RS13065 0.80 +0.1
704,741 + BBR_RS13065 0.80 +0.6
704,741 + BBR_RS13065 0.80 -0.7
704,748 + BBR_RS13065 0.81 +0.2
704,750 - BBR_RS13065 0.81 -0.9
704,754 + BBR_RS13065 0.82 -1.2
704,784 - BBR_RS13065 0.85 -2.0
704,898 + -1.1
704,958 + -1.0
704,958 + +0.2
704,969 + -0.4
705,022 + +0.3
705,025 + +0.4

Or see this region's nucleotide sequence