Experiment: Motility_chemotaxis, R2A; inner cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_005385 and ABIE53_005386 overlap by 8 nucleotides ABIE53_005386 and ABIE53_005387 overlap by 4 nucleotides ABIE53_005387 and ABIE53_005388 overlap by 4 nucleotides
ABIE53_005385: ABIE53_005385 - paraquat-inducible protein B, at 1,656,956 to 1,658,584
_005385
ABIE53_005386: ABIE53_005386 - paraquat-inducible protein A, at 1,658,577 to 1,659,248
_005386
ABIE53_005387: ABIE53_005387 - paraquat-inducible protein A, at 1,659,245 to 1,659,973
_005387
ABIE53_005388: ABIE53_005388 - hypothetical protein, at 1,659,970 to 1,660,914
_005388
Position (kb) 1658
1659
1660 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1657.581 kb on + strand, within ABIE53_005385 at 1657.581 kb on + strand, within ABIE53_005385 at 1657.826 kb on - strand, within ABIE53_005385 at 1657.826 kb on - strand, within ABIE53_005385 at 1657.914 kb on + strand, within ABIE53_005385 at 1657.914 kb on + strand, within ABIE53_005385 at 1657.914 kb on + strand, within ABIE53_005385 at 1657.914 kb on + strand, within ABIE53_005385 at 1657.940 kb on + strand, within ABIE53_005385 at 1657.940 kb on + strand, within ABIE53_005385 at 1657.941 kb on - strand, within ABIE53_005385 at 1657.941 kb on - strand, within ABIE53_005385 at 1657.987 kb on - strand, within ABIE53_005385 at 1657.987 kb on - strand, within ABIE53_005385 at 1658.165 kb on - strand, within ABIE53_005385 at 1658.166 kb on + strand, within ABIE53_005385 at 1658.166 kb on + strand, within ABIE53_005385 at 1658.166 kb on + strand, within ABIE53_005385 at 1658.167 kb on - strand, within ABIE53_005385 at 1658.167 kb on - strand, within ABIE53_005385 at 1658.167 kb on - strand, within ABIE53_005385 at 1658.167 kb on - strand, within ABIE53_005385 at 1658.975 kb on - strand, within ABIE53_005386 at 1659.026 kb on + strand, within ABIE53_005386 at 1659.027 kb on - strand, within ABIE53_005386 at 1659.027 kb on - strand, within ABIE53_005386 at 1659.058 kb on + strand, within ABIE53_005386 at 1659.501 kb on - strand, within ABIE53_005387 at 1659.597 kb on + strand, within ABIE53_005387 at 1659.598 kb on - strand, within ABIE53_005387 at 1659.598 kb on - strand, within ABIE53_005387 at 1659.598 kb on - strand, within ABIE53_005387 at 1659.598 kb on - strand, within ABIE53_005387 at 1659.598 kb on - strand, within ABIE53_005387 at 1659.599 kb on + strand, within ABIE53_005387 at 1659.599 kb on + strand, within ABIE53_005387 at 1659.600 kb on - strand, within ABIE53_005387 at 1659.600 kb on - strand, within ABIE53_005387 at 1659.721 kb on + strand, within ABIE53_005387 at 1660.169 kb on + strand, within ABIE53_005388
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_chemotaxis, R2A; inner cut remove 1,657,581 + ABIE53_005385 0.38 +0.6 1,657,581 + ABIE53_005385 0.38 +0.6 1,657,826 - ABIE53_005385 0.53 +0.6 1,657,826 - ABIE53_005385 0.53 -0.4 1,657,914 + ABIE53_005385 0.59 -1.4 1,657,914 + ABIE53_005385 0.59 +0.2 1,657,914 + ABIE53_005385 0.59 -2.0 1,657,914 + ABIE53_005385 0.59 +0.1 1,657,940 + ABIE53_005385 0.60 +0.0 1,657,940 + ABIE53_005385 0.60 +0.6 1,657,941 - ABIE53_005385 0.60 +0.0 1,657,941 - ABIE53_005385 0.60 -0.4 1,657,987 - ABIE53_005385 0.63 -1.7 1,657,987 - ABIE53_005385 0.63 +1.6 1,658,165 - ABIE53_005385 0.74 -2.0 1,658,166 + ABIE53_005385 0.74 +1.6 1,658,166 + ABIE53_005385 0.74 +0.6 1,658,166 + ABIE53_005385 0.74 -1.0 1,658,167 - ABIE53_005385 0.74 -1.8 1,658,167 - ABIE53_005385 0.74 +0.0 1,658,167 - ABIE53_005385 0.74 -1.0 1,658,167 - ABIE53_005385 0.74 -0.3 1,658,975 - ABIE53_005386 0.59 -0.6 1,659,026 + ABIE53_005386 0.67 -1.7 1,659,027 - ABIE53_005386 0.67 -0.1 1,659,027 - ABIE53_005386 0.67 -1.2 1,659,058 + ABIE53_005386 0.72 -1.0 1,659,501 - ABIE53_005387 0.35 -1.2 1,659,597 + ABIE53_005387 0.48 -1.4 1,659,598 - ABIE53_005387 0.48 -0.5 1,659,598 - ABIE53_005387 0.48 +2.0 1,659,598 - ABIE53_005387 0.48 -1.1 1,659,598 - ABIE53_005387 0.48 +1.2 1,659,598 - ABIE53_005387 0.48 -0.7 1,659,599 + ABIE53_005387 0.49 -0.2 1,659,599 + ABIE53_005387 0.49 +0.6 1,659,600 - ABIE53_005387 0.49 -1.0 1,659,600 - ABIE53_005387 0.49 -0.8 1,659,721 + ABIE53_005387 0.65 +1.6 1,660,169 + ABIE53_005388 0.21 -1.0
Or see this region's nucleotide sequence