Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36050

Experiment: exometabolites; 10% oxygen; 5 mM nitrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS36040 and RR42_RS36045 are separated by 143 nucleotidesRR42_RS36045 and RR42_RS36050 overlap by 32 nucleotidesRR42_RS36050 and RR42_RS36055 are separated by 164 nucleotides RR42_RS36040: RR42_RS36040 - TonB-dependent receptor, at 3,535,633 to 3,537,918 _RS36040 RR42_RS36045: RR42_RS36045 - hypothetical protein, at 3,538,062 to 3,538,850 _RS36045 RR42_RS36050: RR42_RS36050 - hypothetical protein, at 3,538,819 to 3,539,025 _RS36050 RR42_RS36055: RR42_RS36055 - LysR family transcriptional regulator, at 3,539,190 to 3,540,152 _RS36055 Position (kb) 3538 3539 3540Strain fitness (log2 ratio) -2 -1 0 1 2at 3537.835 kb on + strandat 3537.835 kb on + strandat 3537.851 kb on - strandat 3537.913 kb on + strandat 3538.387 kb on - strand, within RR42_RS36045at 3538.425 kb on + strand, within RR42_RS36045at 3538.426 kb on - strand, within RR42_RS36045at 3538.494 kb on + strand, within RR42_RS36045at 3538.494 kb on + strand, within RR42_RS36045at 3538.551 kb on + strand, within RR42_RS36045at 3538.552 kb on - strand, within RR42_RS36045at 3538.552 kb on - strand, within RR42_RS36045at 3538.571 kb on - strand, within RR42_RS36045at 3538.571 kb on - strand, within RR42_RS36045at 3538.599 kb on + strand, within RR42_RS36045at 3538.600 kb on - strand, within RR42_RS36045at 3538.602 kb on + strand, within RR42_RS36045at 3538.647 kb on + strand, within RR42_RS36045at 3538.667 kb on - strand, within RR42_RS36045at 3538.793 kb on + strandat 3538.917 kb on + strand, within RR42_RS36050at 3538.953 kb on + strand, within RR42_RS36050at 3539.009 kb on + strandat 3539.010 kb on - strandat 3539.105 kb on + strandat 3539.106 kb on - strandat 3539.106 kb on - strandat 3539.106 kb on - strandat 3539.325 kb on + strand, within RR42_RS36055at 3539.440 kb on + strand, within RR42_RS36055at 3539.441 kb on - strand, within RR42_RS36055at 3539.488 kb on - strand, within RR42_RS36055at 3539.635 kb on + strand, within RR42_RS36055at 3539.635 kb on + strand, within RR42_RS36055at 3539.635 kb on + strand, within RR42_RS36055at 3539.635 kb on + strand, within RR42_RS36055at 3539.635 kb on + strand, within RR42_RS36055at 3539.636 kb on - strand, within RR42_RS36055at 3539.636 kb on - strand, within RR42_RS36055at 3539.641 kb on + strand, within RR42_RS36055at 3539.641 kb on + strand, within RR42_RS36055at 3539.641 kb on + strand, within RR42_RS36055at 3539.641 kb on + strand, within RR42_RS36055at 3539.641 kb on + strand, within RR42_RS36055at 3539.642 kb on - strand, within RR42_RS36055at 3539.815 kb on + strand, within RR42_RS36055at 3539.816 kb on - strand, within RR42_RS36055at 3539.816 kb on - strand, within RR42_RS36055at 3539.824 kb on + strand, within RR42_RS36055at 3539.825 kb on - strand, within RR42_RS36055at 3539.825 kb on - strand, within RR42_RS36055at 3539.825 kb on - strand, within RR42_RS36055at 3539.825 kb on - strand, within RR42_RS36055at 3539.825 kb on - strand, within RR42_RS36055at 3539.939 kb on - strand, within RR42_RS36055at 3539.939 kb on - strand, within RR42_RS36055

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Per-strain Table

Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate
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3,537,835 + -0.0
3,537,835 + +0.8
3,537,851 - +0.7
3,537,913 + +0.2
3,538,387 - RR42_RS36045 0.41 +1.7
3,538,425 + RR42_RS36045 0.46 +1.4
3,538,426 - RR42_RS36045 0.46 +1.1
3,538,494 + RR42_RS36045 0.55 +0.7
3,538,494 + RR42_RS36045 0.55 -0.0
3,538,551 + RR42_RS36045 0.62 +0.1
3,538,552 - RR42_RS36045 0.62 +0.5
3,538,552 - RR42_RS36045 0.62 -0.3
3,538,571 - RR42_RS36045 0.65 +0.0
3,538,571 - RR42_RS36045 0.65 +0.8
3,538,599 + RR42_RS36045 0.68 -1.0
3,538,600 - RR42_RS36045 0.68 +0.7
3,538,602 + RR42_RS36045 0.68 -2.5
3,538,647 + RR42_RS36045 0.74 -1.1
3,538,667 - RR42_RS36045 0.77 +2.7
3,538,793 + +0.1
3,538,917 + RR42_RS36050 0.47 -0.2
3,538,953 + RR42_RS36050 0.65 -0.5
3,539,009 + -0.1
3,539,010 - +0.8
3,539,105 + +0.3
3,539,106 - +0.4
3,539,106 - -0.5
3,539,106 - -1.0
3,539,325 + RR42_RS36055 0.14 -0.4
3,539,440 + RR42_RS36055 0.26 -0.6
3,539,441 - RR42_RS36055 0.26 -0.2
3,539,488 - RR42_RS36055 0.31 -0.2
3,539,635 + RR42_RS36055 0.46 -1.3
3,539,635 + RR42_RS36055 0.46 -0.6
3,539,635 + RR42_RS36055 0.46 -0.4
3,539,635 + RR42_RS36055 0.46 -0.0
3,539,635 + RR42_RS36055 0.46 -0.0
3,539,636 - RR42_RS36055 0.46 -1.1
3,539,636 - RR42_RS36055 0.46 -0.5
3,539,641 + RR42_RS36055 0.47 +0.1
3,539,641 + RR42_RS36055 0.47 -0.8
3,539,641 + RR42_RS36055 0.47 -0.2
3,539,641 + RR42_RS36055 0.47 -0.7
3,539,641 + RR42_RS36055 0.47 -1.1
3,539,642 - RR42_RS36055 0.47 -1.7
3,539,815 + RR42_RS36055 0.65 +0.0
3,539,816 - RR42_RS36055 0.65 +1.0
3,539,816 - RR42_RS36055 0.65 -0.7
3,539,824 + RR42_RS36055 0.66 -0.4
3,539,825 - RR42_RS36055 0.66 +1.0
3,539,825 - RR42_RS36055 0.66 +0.4
3,539,825 - RR42_RS36055 0.66 -0.8
3,539,825 - RR42_RS36055 0.66 -0.9
3,539,825 - RR42_RS36055 0.66 -0.4
3,539,939 - RR42_RS36055 0.78 +0.2
3,539,939 - RR42_RS36055 0.78 +1.1

Or see this region's nucleotide sequence