Experiment: exometabolites; 10% oxygen; 5 mM nitrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24145 and RR42_RS24150 are separated by 14 nucleotides RR42_RS24150 and RR42_RS24155 are separated by 35 nucleotides
RR42_RS24145: RR42_RS24145 - hypothetical protein, at 743,257 to 744,894
_RS24145
RR42_RS24150: RR42_RS24150 - thioesterase, at 744,909 to 745,316
_RS24150
RR42_RS24155: RR42_RS24155 - monooxygenase, at 745,352 to 746,494
_RS24155
Position (kb) 744
745
746 Strain fitness (log2 ratio) -2
-1
0
1
2 at 743.929 kb on + strand, within RR42_RS24145 at 743.929 kb on + strand, within RR42_RS24145 at 743.930 kb on - strand, within RR42_RS24145 at 743.930 kb on - strand, within RR42_RS24145 at 744.064 kb on + strand, within RR42_RS24145 at 744.314 kb on + strand, within RR42_RS24145 at 744.315 kb on - strand, within RR42_RS24145 at 744.378 kb on - strand, within RR42_RS24145 at 744.437 kb on - strand, within RR42_RS24145 at 744.608 kb on - strand, within RR42_RS24145 at 744.608 kb on - strand, within RR42_RS24145 at 744.642 kb on + strand, within RR42_RS24145 at 744.642 kb on + strand, within RR42_RS24145 at 744.745 kb on + strand at 744.746 kb on - strand at 744.887 kb on + strand at 744.888 kb on - strand at 744.888 kb on - strand at 744.914 kb on + strand at 744.915 kb on - strand at 744.919 kb on - strand at 744.919 kb on - strand at 744.924 kb on + strand at 744.985 kb on - strand, within RR42_RS24150 at 744.985 kb on - strand, within RR42_RS24150 at 745.108 kb on + strand at 745.119 kb on - strand, within RR42_RS24150 at 745.132 kb on - strand, within RR42_RS24150 at 745.136 kb on - strand, within RR42_RS24150 at 745.136 kb on - strand, within RR42_RS24150 at 745.136 kb on - strand, within RR42_RS24150 at 745.250 kb on - strand, within RR42_RS24150 at 745.336 kb on + strand at 745.363 kb on + strand at 745.363 kb on + strand at 745.363 kb on + strand at 745.368 kb on + strand at 745.391 kb on + strand at 745.442 kb on + strand at 745.443 kb on - strand at 745.443 kb on - strand at 745.659 kb on + strand, within RR42_RS24155 at 745.681 kb on - strand, within RR42_RS24155 at 745.689 kb on + strand, within RR42_RS24155 at 745.689 kb on + strand, within RR42_RS24155 at 745.817 kb on + strand, within RR42_RS24155 at 745.817 kb on + strand, within RR42_RS24155 at 745.882 kb on + strand, within RR42_RS24155 at 745.882 kb on + strand, within RR42_RS24155 at 745.882 kb on + strand, within RR42_RS24155 at 745.883 kb on - strand, within RR42_RS24155 at 745.891 kb on - strand, within RR42_RS24155 at 745.920 kb on - strand, within RR42_RS24155 at 746.209 kb on - strand, within RR42_RS24155 at 746.209 kb on - strand, within RR42_RS24155 at 746.209 kb on - strand, within RR42_RS24155
Per-strain Table
Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate remove 743,929 + RR42_RS24145 0.41 +0.3 743,929 + RR42_RS24145 0.41 -0.3 743,930 - RR42_RS24145 0.41 -0.0 743,930 - RR42_RS24145 0.41 -1.0 744,064 + RR42_RS24145 0.49 -0.2 744,314 + RR42_RS24145 0.65 -0.3 744,315 - RR42_RS24145 0.65 +0.1 744,378 - RR42_RS24145 0.68 -1.2 744,437 - RR42_RS24145 0.72 -1.3 744,608 - RR42_RS24145 0.82 -0.0 744,608 - RR42_RS24145 0.82 +0.4 744,642 + RR42_RS24145 0.85 +0.2 744,642 + RR42_RS24145 0.85 +0.9 744,745 + -1.2 744,746 - -1.0 744,887 + +1.3 744,888 - -0.4 744,888 - -0.5 744,914 + +0.1 744,915 - +0.9 744,919 - -1.8 744,919 - -0.4 744,924 + +0.0 744,985 - RR42_RS24150 0.19 -0.6 744,985 - RR42_RS24150 0.19 -0.5 745,108 + +0.3 745,119 - RR42_RS24150 0.51 +1.0 745,132 - RR42_RS24150 0.55 -0.0 745,136 - RR42_RS24150 0.56 -0.2 745,136 - RR42_RS24150 0.56 -0.1 745,136 - RR42_RS24150 0.56 -0.2 745,250 - RR42_RS24150 0.84 -2.2 745,336 + +0.3 745,363 + -0.6 745,363 + -1.4 745,363 + +0.8 745,368 + +0.6 745,391 + +0.9 745,442 + -0.3 745,443 - -0.3 745,443 - +0.8 745,659 + RR42_RS24155 0.27 -0.1 745,681 - RR42_RS24155 0.29 -0.1 745,689 + RR42_RS24155 0.29 -0.2 745,689 + RR42_RS24155 0.29 -0.2 745,817 + RR42_RS24155 0.41 +1.1 745,817 + RR42_RS24155 0.41 +1.1 745,882 + RR42_RS24155 0.46 +0.3 745,882 + RR42_RS24155 0.46 -0.6 745,882 + RR42_RS24155 0.46 +1.1 745,883 - RR42_RS24155 0.46 -0.3 745,891 - RR42_RS24155 0.47 +2.1 745,920 - RR42_RS24155 0.50 -0.4 746,209 - RR42_RS24155 0.75 +0.0 746,209 - RR42_RS24155 0.75 -0.5 746,209 - RR42_RS24155 0.75 +0.3
Or see this region's nucleotide sequence