Experiment: exometabolites; 10% oxygen; 5 mM nitrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22935 and RR42_RS22940 are separated by 60 nucleotides RR42_RS22940 and RR42_RS22945 are separated by 137 nucleotides
RR42_RS22935: RR42_RS22935 - metal transporter, at 479,396 to 480,613
_RS22935
RR42_RS22940: RR42_RS22940 - TetR family transcriptional regulator, at 480,674 to 481,348
_RS22940
RR42_RS22945: RR42_RS22945 - oxidoreductase, at 481,486 to 482,514
_RS22945
Position (kb) 480
481
482 Strain fitness (log2 ratio) -2
-1
0
1
2 at 479.866 kb on - strand, within RR42_RS22935 at 480.080 kb on + strand, within RR42_RS22935 at 480.080 kb on + strand, within RR42_RS22935 at 480.081 kb on - strand, within RR42_RS22935 at 480.458 kb on + strand, within RR42_RS22935 at 480.661 kb on + strand at 480.819 kb on - strand, within RR42_RS22940 at 481.130 kb on - strand, within RR42_RS22940 at 481.182 kb on + strand, within RR42_RS22940 at 481.183 kb on - strand, within RR42_RS22940 at 481.735 kb on + strand, within RR42_RS22945 at 481.735 kb on + strand, within RR42_RS22945 at 481.735 kb on + strand, within RR42_RS22945 at 481.735 kb on + strand, within RR42_RS22945 at 481.735 kb on + strand, within RR42_RS22945 at 481.735 kb on + strand, within RR42_RS22945 at 481.736 kb on - strand, within RR42_RS22945 at 481.810 kb on + strand, within RR42_RS22945 at 481.811 kb on - strand, within RR42_RS22945 at 481.924 kb on + strand, within RR42_RS22945 at 481.924 kb on + strand, within RR42_RS22945 at 481.924 kb on + strand, within RR42_RS22945 at 481.924 kb on + strand, within RR42_RS22945 at 481.925 kb on - strand, within RR42_RS22945 at 481.927 kb on + strand, within RR42_RS22945 at 481.928 kb on - strand, within RR42_RS22945 at 482.205 kb on + strand, within RR42_RS22945 at 482.205 kb on + strand, within RR42_RS22945 at 482.205 kb on + strand, within RR42_RS22945 at 482.206 kb on - strand, within RR42_RS22945 at 482.206 kb on - strand, within RR42_RS22945 at 482.317 kb on + strand, within RR42_RS22945
Per-strain Table
Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate remove 479,866 - RR42_RS22935 0.39 +0.4 480,080 + RR42_RS22935 0.56 -0.5 480,080 + RR42_RS22935 0.56 +2.1 480,081 - RR42_RS22935 0.56 +0.6 480,458 + RR42_RS22935 0.87 +1.1 480,661 + +1.2 480,819 - RR42_RS22940 0.21 +1.1 481,130 - RR42_RS22940 0.68 +0.4 481,182 + RR42_RS22940 0.75 +1.7 481,183 - RR42_RS22940 0.75 +1.3 481,735 + RR42_RS22945 0.24 +0.2 481,735 + RR42_RS22945 0.24 +0.4 481,735 + RR42_RS22945 0.24 -0.8 481,735 + RR42_RS22945 0.24 +0.2 481,735 + RR42_RS22945 0.24 -2.1 481,735 + RR42_RS22945 0.24 -0.5 481,736 - RR42_RS22945 0.24 +0.0 481,810 + RR42_RS22945 0.31 -1.5 481,811 - RR42_RS22945 0.32 +1.0 481,924 + RR42_RS22945 0.43 +0.7 481,924 + RR42_RS22945 0.43 -0.1 481,924 + RR42_RS22945 0.43 +0.5 481,924 + RR42_RS22945 0.43 +0.4 481,925 - RR42_RS22945 0.43 +0.2 481,927 + RR42_RS22945 0.43 +0.9 481,928 - RR42_RS22945 0.43 +0.6 482,205 + RR42_RS22945 0.70 +0.3 482,205 + RR42_RS22945 0.70 +0.6 482,205 + RR42_RS22945 0.70 -0.0 482,206 - RR42_RS22945 0.70 +0.5 482,206 - RR42_RS22945 0.70 +0.2 482,317 + RR42_RS22945 0.81 +0.4
Or see this region's nucleotide sequence