Experiment: exometabolites; 10% oxygen; 5 mM nitrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22465 and RR42_RS22470 are separated by 173 nucleotides RR42_RS22470 and RR42_RS22475 are separated by 101 nucleotides RR42_RS22475 and RR42_RS22480 are separated by 35 nucleotides
RR42_RS22465: RR42_RS22465 - membrane protein, at 375,940 to 377,994
_RS22465
RR42_RS22470: RR42_RS22470 - MFS transporter, at 378,168 to 379,493
_RS22470
RR42_RS22475: RR42_RS22475 - hypothetical protein, at 379,595 to 379,810
_RS22475
RR42_RS22480: RR42_RS22480 - FAD-dependent oxidoreductase, at 379,846 to 381,579
_RS22480
Position (kb) 378
379
380 Strain fitness (log2 ratio) -2
-1
0
1 at 377.214 kb on - strand, within RR42_RS22465 at 377.427 kb on - strand, within RR42_RS22465 at 377.585 kb on + strand, within RR42_RS22465 at 377.585 kb on + strand, within RR42_RS22465 at 377.585 kb on + strand, within RR42_RS22465 at 377.586 kb on - strand, within RR42_RS22465 at 377.588 kb on + strand, within RR42_RS22465 at 377.588 kb on + strand, within RR42_RS22465 at 377.588 kb on + strand, within RR42_RS22465 at 377.589 kb on - strand, within RR42_RS22465 at 377.589 kb on - strand, within RR42_RS22465 at 377.627 kb on + strand, within RR42_RS22465 at 377.628 kb on - strand, within RR42_RS22465 at 377.927 kb on + strand at 377.928 kb on - strand at 377.978 kb on + strand at 377.979 kb on - strand at 377.983 kb on - strand at 378.244 kb on + strand at 378.244 kb on + strand at 378.245 kb on - strand at 378.245 kb on - strand at 378.245 kb on - strand at 378.335 kb on + strand, within RR42_RS22470 at 378.608 kb on - strand, within RR42_RS22470 at 378.707 kb on + strand, within RR42_RS22470 at 378.707 kb on + strand, within RR42_RS22470 at 378.708 kb on - strand, within RR42_RS22470 at 378.721 kb on + strand, within RR42_RS22470 at 378.722 kb on - strand, within RR42_RS22470 at 378.934 kb on + strand, within RR42_RS22470 at 378.935 kb on - strand, within RR42_RS22470 at 379.073 kb on - strand, within RR42_RS22470 at 379.073 kb on - strand, within RR42_RS22470 at 379.073 kb on - strand, within RR42_RS22470 at 379.133 kb on - strand, within RR42_RS22470 at 379.133 kb on - strand, within RR42_RS22470 at 379.274 kb on - strand, within RR42_RS22470 at 379.274 kb on - strand, within RR42_RS22470 at 379.274 kb on - strand, within RR42_RS22470 at 379.274 kb on - strand, within RR42_RS22470 at 379.298 kb on - strand, within RR42_RS22470 at 379.376 kb on + strand at 379.377 kb on - strand at 379.381 kb on + strand at 379.381 kb on + strand at 379.382 kb on - strand at 379.382 kb on - strand at 379.382 kb on - strand at 379.998 kb on - strand at 380.022 kb on - strand, within RR42_RS22480 at 380.203 kb on + strand, within RR42_RS22480 at 380.204 kb on - strand, within RR42_RS22480 at 380.356 kb on - strand, within RR42_RS22480 at 380.356 kb on - strand, within RR42_RS22480 at 380.493 kb on - strand, within RR42_RS22480
Per-strain Table
Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate remove 377,214 - RR42_RS22465 0.62 -0.1 377,427 - RR42_RS22465 0.72 -0.1 377,585 + RR42_RS22465 0.80 -1.3 377,585 + RR42_RS22465 0.80 +0.7 377,585 + RR42_RS22465 0.80 -0.5 377,586 - RR42_RS22465 0.80 -1.9 377,588 + RR42_RS22465 0.80 -0.1 377,588 + RR42_RS22465 0.80 -0.8 377,588 + RR42_RS22465 0.80 -0.7 377,589 - RR42_RS22465 0.80 +0.0 377,589 - RR42_RS22465 0.80 -1.2 377,627 + RR42_RS22465 0.82 -0.6 377,628 - RR42_RS22465 0.82 +0.4 377,927 + -0.1 377,928 - -0.1 377,978 + -0.5 377,979 - +0.2 377,983 - +0.9 378,244 + +0.7 378,244 + -0.5 378,245 - -0.6 378,245 - +0.9 378,245 - +1.0 378,335 + RR42_RS22470 0.13 -0.1 378,608 - RR42_RS22470 0.33 -0.1 378,707 + RR42_RS22470 0.41 -0.6 378,707 + RR42_RS22470 0.41 -0.0 378,708 - RR42_RS22470 0.41 +0.2 378,721 + RR42_RS22470 0.42 +0.1 378,722 - RR42_RS22470 0.42 -0.5 378,934 + RR42_RS22470 0.58 -0.2 378,935 - RR42_RS22470 0.58 -1.3 379,073 - RR42_RS22470 0.68 -0.2 379,073 - RR42_RS22470 0.68 +0.2 379,073 - RR42_RS22470 0.68 +0.5 379,133 - RR42_RS22470 0.73 +0.2 379,133 - RR42_RS22470 0.73 +0.5 379,274 - RR42_RS22470 0.83 -0.9 379,274 - RR42_RS22470 0.83 +0.6 379,274 - RR42_RS22470 0.83 -0.0 379,274 - RR42_RS22470 0.83 -0.4 379,298 - RR42_RS22470 0.85 +0.1 379,376 + -0.7 379,377 - +0.0 379,381 + -0.3 379,381 + +0.1 379,382 - +0.5 379,382 - -0.8 379,382 - -0.6 379,998 - -0.8 380,022 - RR42_RS22480 0.10 +0.1 380,203 + RR42_RS22480 0.21 -0.2 380,204 - RR42_RS22480 0.21 +0.5 380,356 - RR42_RS22480 0.29 +0.2 380,356 - RR42_RS22480 0.29 +0.0 380,493 - RR42_RS22480 0.37 -0.6
Or see this region's nucleotide sequence