Experiment: exometabolites; 10% oxygen; 5 mM nitrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS06120 and RR42_RS06125 are separated by 325 nucleotides RR42_RS06125 and RR42_RS06130 are separated by 187 nucleotides RR42_RS06130 and RR42_RS06135 are separated by 262 nucleotides
RR42_RS06120: RR42_RS06120 - transcriptional regulator, at 1,344,095 to 1,345,033
_RS06120
RR42_RS06125: RR42_RS06125 - phosphogluconate dehydratase, at 1,345,359 to 1,347,245
_RS06125
RR42_RS06130: RR42_RS06130 - Gluconokinase (EC 2.7.1.12) <small>(from data)</small>, at 1,347,433 to 1,347,942
_RS06130
RR42_RS06135: RR42_RS06135 - hypothetical protein, at 1,348,205 to 1,349,677
_RS06135
Position (kb) 1345
1346
1347
1348 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1344.640 kb on - strand, within RR42_RS06120 at 1344.970 kb on - strand at 1344.970 kb on - strand at 1345.008 kb on + strand at 1345.009 kb on - strand at 1345.009 kb on - strand at 1345.009 kb on - strand at 1345.119 kb on - strand at 1345.122 kb on + strand at 1345.122 kb on + strand at 1345.132 kb on - strand at 1345.135 kb on - strand at 1345.187 kb on + strand at 1345.212 kb on - strand at 1345.261 kb on - strand at 1345.262 kb on + strand at 1345.262 kb on + strand at 1345.263 kb on - strand at 1345.305 kb on + strand at 1345.306 kb on - strand at 1345.306 kb on - strand at 1345.306 kb on - strand at 1345.306 kb on - strand at 1345.438 kb on - strand at 1345.438 kb on - strand at 1345.590 kb on + strand, within RR42_RS06125 at 1345.591 kb on - strand, within RR42_RS06125 at 1346.034 kb on - strand, within RR42_RS06125 at 1346.034 kb on - strand, within RR42_RS06125 at 1346.034 kb on - strand, within RR42_RS06125 at 1346.034 kb on - strand, within RR42_RS06125 at 1346.041 kb on - strand, within RR42_RS06125 at 1346.091 kb on - strand, within RR42_RS06125 at 1347.244 kb on - strand at 1347.244 kb on - strand at 1347.439 kb on + strand at 1347.439 kb on + strand at 1347.439 kb on + strand at 1347.439 kb on + strand at 1347.439 kb on + strand at 1347.439 kb on + strand at 1347.439 kb on + strand at 1347.439 kb on + strand at 1347.440 kb on - strand at 1347.663 kb on + strand, within RR42_RS06130 at 1347.734 kb on - strand, within RR42_RS06130 at 1347.734 kb on - strand, within RR42_RS06130 at 1347.734 kb on - strand, within RR42_RS06130 at 1347.734 kb on - strand, within RR42_RS06130 at 1347.989 kb on + strand at 1347.990 kb on - strand at 1348.039 kb on + strand at 1348.040 kb on - strand at 1348.040 kb on - strand at 1348.040 kb on - strand at 1348.040 kb on - strand at 1348.040 kb on - strand at 1348.040 kb on - strand at 1348.040 kb on - strand at 1348.040 kb on - strand at 1348.043 kb on + strand at 1348.043 kb on + strand at 1348.044 kb on - strand at 1348.044 kb on - strand at 1348.048 kb on + strand at 1348.048 kb on + strand at 1348.049 kb on - strand at 1348.049 kb on - strand at 1348.051 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate remove 1,344,640 - RR42_RS06120 0.58 +0.1 1,344,970 - -0.9 1,344,970 - +0.0 1,345,008 + -0.9 1,345,009 - -0.6 1,345,009 - -0.5 1,345,009 - -2.0 1,345,119 - -1.6 1,345,122 + -0.5 1,345,122 + -1.0 1,345,132 - -0.6 1,345,135 - -1.9 1,345,187 + +0.2 1,345,212 - -2.1 1,345,261 - -1.6 1,345,262 + -0.6 1,345,262 + -1.2 1,345,263 - -0.3 1,345,305 + -1.7 1,345,306 - +0.0 1,345,306 - -1.3 1,345,306 - -0.3 1,345,306 - -1.4 1,345,438 - +0.3 1,345,438 - -1.1 1,345,590 + RR42_RS06125 0.12 -0.3 1,345,591 - RR42_RS06125 0.12 -0.4 1,346,034 - RR42_RS06125 0.36 -0.9 1,346,034 - RR42_RS06125 0.36 -0.9 1,346,034 - RR42_RS06125 0.36 +1.9 1,346,034 - RR42_RS06125 0.36 -0.6 1,346,041 - RR42_RS06125 0.36 -3.1 1,346,091 - RR42_RS06125 0.39 -3.2 1,347,244 - +0.9 1,347,244 - +0.2 1,347,439 + +0.3 1,347,439 + -0.3 1,347,439 + -0.2 1,347,439 + +0.0 1,347,439 + -0.6 1,347,439 + -0.2 1,347,439 + -0.0 1,347,439 + -1.3 1,347,440 - +0.3 1,347,663 + RR42_RS06130 0.45 -0.4 1,347,734 - RR42_RS06130 0.59 -1.4 1,347,734 - RR42_RS06130 0.59 -0.4 1,347,734 - RR42_RS06130 0.59 +0.5 1,347,734 - RR42_RS06130 0.59 -0.2 1,347,989 + +0.1 1,347,990 - +0.9 1,348,039 + +1.6 1,348,040 - -0.0 1,348,040 - +1.2 1,348,040 - -0.4 1,348,040 - +0.3 1,348,040 - -0.1 1,348,040 - +0.1 1,348,040 - +0.7 1,348,040 - -0.1 1,348,043 + +0.6 1,348,043 + +0.7 1,348,044 - -0.2 1,348,044 - +0.0 1,348,048 + -1.3 1,348,048 + -2.8 1,348,049 - -0.9 1,348,049 - -0.1 1,348,051 - -0.3
Or see this region's nucleotide sequence