Experiment: exometabolites; 10% oxygen; 5 mM nitrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04070 and RR42_RS04075 are separated by 526 nucleotides RR42_RS04075 and RR42_RS04080 are separated by 40 nucleotides RR42_RS04080 and RR42_RS04085 are separated by 138 nucleotides
RR42_RS04070: RR42_RS04070 - quinone oxidoreductase, at 900,563 to 901,567
_RS04070
RR42_RS04075: RR42_RS04075 - molecular chaperone GroES, at 902,094 to 902,384
_RS04075
RR42_RS04080: RR42_RS04080 - molecular chaperone GroEL, at 902,425 to 904,068
_RS04080
RR42_RS04085: RR42_RS04085 - metallophosphoesterase, at 904,207 to 904,995
_RS04085
Position (kb)
902
903
904
905 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 901.470 kb on - strand at 901.579 kb on + strand at 901.581 kb on + strand at 901.582 kb on - strand at 901.582 kb on - strand at 901.597 kb on + strand at 901.597 kb on + strand at 901.598 kb on - strand at 901.598 kb on - strand at 901.598 kb on - strand at 901.643 kb on + strand at 901.659 kb on + strand at 901.872 kb on + strand at 901.872 kb on + strand at 901.932 kb on + strand at 901.932 kb on + strand at 901.970 kb on + strand at 901.970 kb on + strand at 904.067 kb on - strand at 904.067 kb on - strand at 904.100 kb on + strand at 904.116 kb on - strand at 904.116 kb on - strand at 904.161 kb on + strand at 904.175 kb on - strand at 904.208 kb on + strand at 904.208 kb on + strand at 904.209 kb on - strand at 904.223 kb on + strand at 904.274 kb on + strand at 904.274 kb on + strand at 904.274 kb on + strand at 904.329 kb on + strand, within RR42_RS04085 at 904.335 kb on + strand, within RR42_RS04085 at 904.336 kb on - strand, within RR42_RS04085 at 904.665 kb on - strand, within RR42_RS04085 at 904.815 kb on - strand, within RR42_RS04085 at 904.815 kb on - strand, within RR42_RS04085 at 904.839 kb on - strand, within RR42_RS04085
Per-strain Table
Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate remove 901,470 - -0.4 901,579 + -1.1 901,581 + -0.3 901,582 - +0.2 901,582 - -0.3 901,597 + +1.1 901,597 + +0.9 901,598 - -0.2 901,598 - -0.8 901,598 - +0.3 901,643 + -0.6 901,659 + -0.6 901,872 + -0.0 901,872 + +0.2 901,932 + -0.7 901,932 + -0.7 901,970 + +0.7 901,970 + -0.6 904,067 - -1.0 904,067 - -0.2 904,100 + +1.0 904,116 - +0.4 904,116 - +2.0 904,161 + +0.3 904,175 - +0.3 904,208 + +0.8 904,208 + -0.4 904,209 - +1.2 904,223 + -0.2 904,274 + +0.4 904,274 + +0.1 904,274 + -2.3 904,329 + RR42_RS04085 0.15 -1.0 904,335 + RR42_RS04085 0.16 -0.0 904,336 - RR42_RS04085 0.16 -0.5 904,665 - RR42_RS04085 0.58 -0.5 904,815 - RR42_RS04085 0.77 -0.3 904,815 - RR42_RS04085 0.77 -0.4 904,839 - RR42_RS04085 0.80 -0.2
Or see this region's nucleotide sequence