Experiment: exometabolites; 10% oxygen; 5 mM nitrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02150 and RR42_RS02155 are separated by 197 nucleotides RR42_RS02155 and RR42_RS02160 are separated by 128 nucleotides RR42_RS02160 and RR42_RS02165 are separated by 102 nucleotides
RR42_RS02150: RR42_RS02150 - membrane protein, at 478,095 to 479,351
_RS02150
RR42_RS02155: RR42_RS02155 - single-stranded DNA-binding protein, at 479,549 to 480,103
_RS02155
RR42_RS02160: RR42_RS02160 - LacI family transcriptional regulator, at 480,232 to 481,215
_RS02160
RR42_RS02165: RR42_RS02165 - LysR family transcriptional regulator, at 481,318 to 482,256
_RS02165
Position (kb) 480
481
482 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 479.285 kb on + strand at 479.285 kb on + strand at 479.287 kb on + strand at 479.417 kb on + strand at 479.421 kb on + strand at 479.421 kb on + strand at 479.468 kb on + strand at 480.321 kb on + strand at 480.450 kb on - strand, within RR42_RS02160 at 480.450 kb on - strand, within RR42_RS02160 at 480.460 kb on + strand, within RR42_RS02160 at 480.460 kb on + strand, within RR42_RS02160 at 480.461 kb on - strand, within RR42_RS02160 at 480.461 kb on - strand, within RR42_RS02160 at 480.653 kb on + strand, within RR42_RS02160 at 480.653 kb on + strand, within RR42_RS02160 at 480.653 kb on + strand, within RR42_RS02160 at 480.654 kb on - strand, within RR42_RS02160 at 480.654 kb on - strand, within RR42_RS02160 at 480.654 kb on - strand, within RR42_RS02160 at 480.741 kb on - strand, within RR42_RS02160 at 480.770 kb on + strand, within RR42_RS02160 at 480.771 kb on - strand, within RR42_RS02160 at 480.893 kb on + strand, within RR42_RS02160 at 480.893 kb on + strand, within RR42_RS02160 at 480.893 kb on + strand, within RR42_RS02160 at 480.893 kb on + strand, within RR42_RS02160 at 480.894 kb on + strand, within RR42_RS02160 at 480.942 kb on - strand, within RR42_RS02160 at 480.942 kb on - strand, within RR42_RS02160 at 480.942 kb on - strand, within RR42_RS02160 at 480.942 kb on - strand, within RR42_RS02160 at 481.149 kb on + strand at 481.149 kb on + strand at 481.150 kb on - strand at 481.271 kb on + strand at 481.271 kb on + strand at 481.272 kb on - strand at 481.275 kb on + strand at 481.275 kb on + strand at 481.276 kb on - strand at 481.810 kb on - strand, within RR42_RS02165 at 481.810 kb on - strand, within RR42_RS02165 at 481.810 kb on - strand, within RR42_RS02165 at 481.829 kb on - strand, within RR42_RS02165 at 481.914 kb on - strand, within RR42_RS02165
Per-strain Table
Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate remove 479,285 + -1.2 479,285 + -1.5 479,287 + -0.1 479,417 + +0.8 479,421 + -0.2 479,421 + -0.2 479,468 + +1.0 480,321 + -0.1 480,450 - RR42_RS02160 0.22 +0.0 480,450 - RR42_RS02160 0.22 +0.2 480,460 + RR42_RS02160 0.23 -0.4 480,460 + RR42_RS02160 0.23 -0.5 480,461 - RR42_RS02160 0.23 -0.7 480,461 - RR42_RS02160 0.23 -0.3 480,653 + RR42_RS02160 0.43 -0.2 480,653 + RR42_RS02160 0.43 -0.1 480,653 + RR42_RS02160 0.43 +0.1 480,654 - RR42_RS02160 0.43 +0.3 480,654 - RR42_RS02160 0.43 +0.9 480,654 - RR42_RS02160 0.43 +0.1 480,741 - RR42_RS02160 0.52 +0.0 480,770 + RR42_RS02160 0.55 -0.3 480,771 - RR42_RS02160 0.55 -0.4 480,893 + RR42_RS02160 0.67 +0.5 480,893 + RR42_RS02160 0.67 +0.3 480,893 + RR42_RS02160 0.67 -3.2 480,893 + RR42_RS02160 0.67 -0.1 480,894 + RR42_RS02160 0.67 +0.7 480,942 - RR42_RS02160 0.72 -0.6 480,942 - RR42_RS02160 0.72 -0.6 480,942 - RR42_RS02160 0.72 -0.3 480,942 - RR42_RS02160 0.72 +0.1 481,149 + +1.5 481,149 + -0.5 481,150 - +0.2 481,271 + -0.5 481,271 + +0.7 481,272 - +2.1 481,275 + +1.1 481,275 + -0.1 481,276 - +0.3 481,810 - RR42_RS02165 0.52 +0.7 481,810 - RR42_RS02165 0.52 -0.1 481,810 - RR42_RS02165 0.52 +0.4 481,829 - RR42_RS02165 0.54 +0.7 481,914 - RR42_RS02165 0.63 +1.0
Or see this region's nucleotide sequence