Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4564

Experiment: BHIS with Rifampicin 0.000048828125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT4562 and BT4563 are separated by 163 nucleotidesBT4563 and BT4564 are separated by 20 nucleotidesBT4564 and BT4565 are separated by 23 nucleotidesBT4565 and tRNA-Thr are separated by 491 nucleotides BT4562: BT4562 - hypothetical protein (NCBI ptt file), at 5,983,259 to 5,983,825 BT4562 BT4563: BT4563 - hypothetical protein (NCBI ptt file), at 5,983,989 to 5,984,540 BT4563 BT4564: BT4564 - putative glycosyltransferase (NCBI ptt file), at 5,984,561 to 5,985,511 BT4564 BT4565: BT4565 - hypothetical protein (NCBI ptt file), at 5,985,535 to 5,985,909 BT4565 BT_t69: tRNA-Thr - tRNA-Thr (RefSeq), at 5,986,401 to 5,986,474 tRNA-Thr Position (kb) 5984 5985 5986Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 5983.582 kb on - strand, within BT4562at 5983.707 kb on - strand, within BT4562at 5984.199 kb on - strand, within BT4563at 5984.204 kb on - strand, within BT4563at 5984.211 kb on - strand, within BT4563at 5984.426 kb on - strand, within BT4563at 5984.426 kb on - strand, within BT4563at 5984.515 kb on - strandat 5984.541 kb on - strandat 5985.523 kb on - strandat 5985.962 kb on - strandat 5986.056 kb on - strandat 5986.142 kb on - strandat 5986.225 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Rifampicin 0.000048828125 mM
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5,983,582 - BT4562 0.57 -2.0
5,983,707 - BT4562 0.79 -3.4
5,984,199 - BT4563 0.38 -1.6
5,984,204 - BT4563 0.39 -2.8
5,984,211 - BT4563 0.40 +0.0
5,984,426 - BT4563 0.79 -3.8
5,984,426 - BT4563 0.79 -3.3
5,984,515 - -1.6
5,984,541 - -0.8
5,985,523 - -1.6
5,985,962 - +1.0
5,986,056 - +0.0
5,986,142 - -1.2
5,986,225 - +0.6

Or see this region's nucleotide sequence