Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3475

Experiment: BHIS with Rifampicin 0.000048828125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Rifampicin 0.000048828125 mM
4,474,472	+		BT3474	0.55	-1.0
4,474,518	+		BT3474	0.57	-1.4
4,474,524	-		BT3474	0.58	+0.0
4,474,556	-		BT3474	0.59	+0.0
4,474,626	+		BT3474	0.63	-1.6
4,474,639	+		BT3474	0.63	-0.4
4,474,657	-		BT3474	0.64	-1.6
4,474,681	+		BT3474	0.65	+1.0
4,474,700	-		BT3474	0.66	+1.0
4,474,751	-		BT3474	0.69	-0.8
4,474,815	-		BT3474	0.72	-1.2
4,474,832	+		BT3474	0.73	-0.3
4,474,833	-		BT3474	0.73	-2.5
4,474,934	+				-1.0
4,474,992	+		BT3474	0.80	-0.5
4,475,013	+		BT3474	0.81	-0.8
4,475,049	+		BT3474	0.83	-1.6
4,475,049	+		BT3474	0.83	-1.8
4,475,051	+		BT3474	0.83	-2.1
4,475,052	-		BT3474	0.83	-1.7
4,475,103	-		BT3474	0.86	+0.6
4,475,124	+		BT3474	0.87	-2.3
4,475,124	+		BT3474	0.87	-0.3
4,475,289	+				-3.3
4,475,290	-				+0.0
4,475,357	-				-2.0
4,475,378	+				+0.0
4,475,379	-				-1.2
4,475,379	-				-1.0
4,475,407	-				+0.5
4,475,558	+				+0.6
4,475,563	+				-2.0
4,475,587	+				-2.6
4,475,587	+				-1.9
4,475,587	+				-0.0
4,475,610	-				-0.7
4,475,640	+				-1.0
4,475,659	+				-2.3
4,475,676	+				-1.0
4,475,758	+		BT3475	0.11	+0.0
4,475,758	+		BT3475	0.11	+2.0
4,475,807	-		BT3475	0.13	-1.6
4,475,832	+		BT3475	0.14	-1.6
4,475,873	+		BT3475	0.15	-1.0
4,475,874	-		BT3475	0.15	+0.0
4,475,894	+		BT3475	0.16	-1.6
4,475,911	+		BT3475	0.16	+0.3
4,475,917	+		BT3475	0.16	+0.3
4,475,989	-		BT3475	0.19	-1.0
4,475,989	-		BT3475	0.19	-0.6
4,475,992	+		BT3475	0.19	-1.0
4,475,992	+		BT3475	0.19	-2.0
4,475,993	-		BT3475	0.19	-2.0
4,476,009	-		BT3475	0.19	-2.3
4,476,014	-		BT3475	0.19	-0.7
4,476,044	-		BT3475	0.20	-1.7
4,476,044	-		BT3475	0.20	-0.3
4,476,135	+		BT3475	0.23	-1.2
4,476,135	+		BT3475	0.23	+0.0
4,476,155	-		BT3475	0.24	-1.7
4,476,177	+		BT3475	0.25	+0.0
4,476,187	+		BT3475	0.25	-1.0
4,476,188	-		BT3475	0.25	+0.0
4,476,190	+		BT3475	0.25	+0.7
4,476,191	-		BT3475	0.25	-1.0
4,476,194	+		BT3475	0.25	-2.4
4,476,287	-		BT3475	0.28	-1.0
4,476,328	+		BT3475	0.29	-1.8
4,476,329	-		BT3475	0.30	+0.0
4,476,330	+		BT3475	0.30	-0.9
4,476,331	-		BT3475	0.30	-2.6
4,476,358	-		BT3475	0.30	-0.6
4,476,437	-		BT3475	0.33	-0.7
4,476,469	+		BT3475	0.34	+0.0
4,476,469	+		BT3475	0.34	-1.8
4,476,480	+		BT3475	0.34	-1.4
4,476,481	-		BT3475	0.34	-0.6
4,476,495	+		BT3475	0.35	-0.6
4,476,628	+		BT3475	0.39	+0.7
4,476,754	+		BT3475	0.43	-0.8
4,476,780	+		BT3475	0.44	-0.4
4,476,780	+		BT3475	0.44	-1.6
4,476,799	-		BT3475	0.45	+0.3
4,476,826	+		BT3475	0.45	-3.2
4,476,826	+		BT3475	0.45	-1.1
4,476,827	-		BT3475	0.45	-0.7
4,476,827	-		BT3475	0.45	-1.6
4,476,847	+		BT3475	0.46	-1.1
4,476,937	+		BT3475	0.49	-1.9
4,476,938	-		BT3475	0.49	+1.0
4,476,971	-		BT3475	0.50	-1.9
4,477,017	-		BT3475	0.52	+0.0
4,477,105	+		BT3475	0.54	+1.0
4,477,141	+		BT3475	0.56	-1.0
4,477,175	+		BT3475	0.57	-0.1
4,477,181	+		BT3475	0.57	+0.0
4,477,181	+		BT3475	0.57	+1.0
4,477,283	+		BT3475	0.60	-0.7
4,477,287	+		BT3475	0.60	+0.0
4,477,294	+		BT3475	0.60	+1.6
4,477,315	+		BT3475	0.61	-1.0
4,477,324	+		BT3475	0.61	-0.6
4,477,324	+		BT3475	0.61	-2.6
4,477,325	-		BT3475	0.61	+1.0
4,477,326	+		BT3475	0.61	-2.3
4,477,333	+		BT3475	0.62	-2.2
4,477,423	+		BT3475	0.65	-1.6
4,477,433	+		BT3475	0.65	-1.0
4,477,433	+		BT3475	0.65	+1.3
4,477,434	-		BT3475	0.65	+0.0
4,477,439	+		BT3475	0.65	-0.8
4,477,439	+		BT3475	0.65	-0.5
4,477,480	+		BT3475	0.66	-0.5
4,477,481	-		BT3475	0.66	-0.3
4,477,502	-		BT3475	0.67	-0.6
4,477,512	+		BT3475	0.67	-1.3
4,477,512	+		BT3475	0.67	-2.3
4,477,516	+		BT3475	0.68	+0.7
4,477,534	-		BT3475	0.68	-0.3
4,477,544	+		BT3475	0.68	-2.8
4,477,545	-		BT3475	0.68	-2.8
4,477,548	+		BT3475	0.69	+1.0
4,477,549	-		BT3475	0.69	-1.2
4,477,551	+		BT3475	0.69	-1.0
4,477,551	+		BT3475	0.69	+0.0
4,477,561	+		BT3475	0.69	+0.0
4,477,565	-		BT3475	0.69	-1.0
4,477,648	-		BT3475	0.72	-1.3
4,477,650	-		BT3475	0.72	+0.0
4,477,668	-		BT3475	0.72	+0.7
4,477,696	+		BT3475	0.73	+0.6
4,477,699	-		BT3475	0.73	-1.1
4,477,749	+		BT3475	0.75	-0.6
4,477,749	+		BT3475	0.75	+1.4
4,477,749	+		BT3475	0.75	-2.8
4,477,749	+		BT3475	0.75	-2.2
4,477,750	-		BT3475	0.75	+1.8
4,477,750	-		BT3475	0.75	-1.1
4,477,755	+		BT3475	0.75	+0.3
4,477,756	-		BT3475	0.75	-0.4
4,477,790	-		BT3475	0.76	+0.0
4,477,790	-		BT3475	0.76	+0.0
4,477,790	-		BT3475	0.76	+0.0
4,477,856	+		BT3475	0.78	-1.1
4,477,856	+		BT3475	0.78	-0.7
4,477,857	-		BT3475	0.78	-1.1
4,477,857	-		BT3475	0.78	+1.0
4,477,859	+		BT3475	0.79	+1.0
4,477,860	-		BT3475	0.79	-1.0
4,477,860	-		BT3475	0.79	+0.0
4,477,891	+		BT3475	0.80	-1.3
4,477,917	-		BT3475	0.80	+1.0
4,477,946	+		BT3475	0.81	+0.6
4,477,960	+		BT3475	0.82	-0.6
4,477,961	-		BT3475	0.82	+0.9
4,477,997	-		BT3475	0.83	+0.0
4,478,084	+		BT3475	0.86	-1.0
4,478,090	-		BT3475	0.86	+0.0
4,478,141	+		BT3475	0.88	-2.0
4,478,142	-		BT3475	0.88	-0.6
4,478,142	-		BT3475	0.88	+0.1
4,478,142	-		BT3475	0.88	+0.0
4,478,152	+		BT3475	0.88	+0.0
4,478,152	+		BT3475	0.88	-1.0
4,478,155	+		BT3475	0.88	+0.0
4,478,155	+		BT3475	0.88	+1.0
4,478,158	+		BT3475	0.88	-0.7
4,478,158	+		BT3475	0.88	-0.9
4,478,159	-		BT3475	0.88	-0.4
4,478,276	+				-3.7
4,478,299	+				+0.5
4,478,299	+				-1.6
4,478,300	-				-1.3
4,478,301	+				+0.0
4,478,301	+				-3.1
4,478,302	-				-0.8
4,478,305	+				-1.6
4,478,305	+				-1.6
4,478,306	-				-1.9
4,478,323	-				-2.0
4,478,336	-				+1.6
4,478,338	+				-1.6
4,478,338	+				-2.1
4,478,339	-				-0.9
4,478,363	-				+0.0
4,478,387	-				+0.0
4,478,390	+				-0.4
4,478,391	-				-1.2
4,478,397	-				+0.0
4,478,397	-				+0.0
4,478,422	+				-1.3
4,478,429	-				-1.6
4,478,448	-				-1.0
4,478,450	+				-3.1
4,478,505	-				+0.0
4,478,529	+				+1.0
4,478,529	+				+1.3
4,478,529	+				-1.6
4,478,529	+				-1.5
4,478,530	-				-1.8
4,478,578	+				-1.0
4,478,628	+				-1.0
4,478,629	-				-2.0
4,478,629	-				-1.0
4,478,629	-				-1.4
4,478,631	-				-2.6
4,478,683	+				+0.0
4,478,684	-				-0.4
4,478,684	-				-1.4
4,478,711	-		BT3476	0.12	-1.6
4,478,755	+		BT3476	0.15	+0.6
4,478,755	+		BT3476	0.15	-0.9
4,478,811	+		BT3476	0.19	+0.0
4,478,812	-		BT3476	0.19	-1.8
4,478,833	+		BT3476	0.20	-1.5
4,478,833	+		BT3476	0.20	-1.4
4,478,914	+		BT3476	0.26	-1.6
4,478,915	-		BT3476	0.26	-1.4
4,478,917	-		BT3476	0.27	+0.0
4,478,978	-		BT3476	0.31	-2.8
4,478,984	+		BT3476	0.31	-2.0
4,478,991	+		BT3476	0.32	+0.0
4,478,992	-		BT3476	0.32	+1.0
4,478,997	+		BT3476	0.32	+2.0
4,478,997	+		BT3476	0.32	-1.8
4,478,998	-		BT3476	0.32	-1.3
4,479,022	+		BT3476	0.34	-0.5
4,479,048	-		BT3476	0.36	-2.3
4,479,079	+		BT3476	0.38	-1.1
4,479,079	+		BT3476	0.38	-0.6
4,479,080	-		BT3476	0.38	-3.2
4,479,138	-		BT3476	0.43	+0.0
4,479,139	+		BT3476	0.43	-1.1
4,479,160	+		BT3476	0.44	+0.0
4,479,222	+		BT3476	0.49	-1.6
4,479,223	-		BT3476	0.49	+0.6
4,479,258	+		BT3476	0.51	-1.4
4,479,259	+		BT3476	0.51	-2.6
4,479,259	+		BT3476	0.51	-2.8
4,479,262	+		BT3476	0.52	-1.3
4,479,298	+		BT3476	0.54	-1.7
4,479,302	+		BT3476	0.55	-1.3
4,479,322	-		BT3476	0.56	+0.2
4,479,323	+		BT3476	0.56	+0.3
4,479,323	+		BT3476	0.56	+0.5
4,479,323	+		BT3476	0.56	+0.0
4,479,324	-		BT3476	0.56	-2.6
4,479,332	+		BT3476	0.57	-1.5
4,479,332	+		BT3476	0.57	-2.0
4,479,332	+		BT3476	0.57	+0.3
4,479,333	-		BT3476	0.57	-2.8
4,479,333	-		BT3476	0.57	-1.0
4,479,336	+		BT3476	0.57	-1.0
4,479,336	+		BT3476	0.57	-1.0
4,479,389	+		BT3476	0.61	+1.0
4,479,389	+		BT3476	0.61	-0.9
4,479,390	-		BT3476	0.61	-0.9
4,479,478	-		BT3476	0.67	-2.3
4,479,506	+		BT3476	0.69	-2.4
4,479,507	-		BT3476	0.70	-2.0
4,479,517	+		BT3476	0.70	+0.0
4,479,518	-		BT3476	0.70	-1.6