Experiment: BHIS with Rifampicin 0.000048828125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0734 and BT0735 are separated by 6 nucleotides BT0735 and BT0736 are separated by 15 nucleotides
BT0734: BT0734 - conserved hypothetical protein (NCBI ptt file), at 908,362 to 910,470
BT0734
BT0735: BT0735 - aspartate decarboxylase AsdA (NCBI ptt file), at 910,477 to 912,150
BT0735
BT0736: BT0736 - putative transport protein (NCBI ptt file), at 912,166 to 913,860
BT0736
Position (kb) 910
911
912
913 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 909.706 kb on - strand, within BT0734 at 909.775 kb on + strand, within BT0734 at 909.776 kb on - strand, within BT0734 at 909.847 kb on - strand, within BT0734 at 909.864 kb on + strand, within BT0734 at 909.886 kb on + strand, within BT0734 at 909.952 kb on + strand, within BT0734 at 909.954 kb on + strand, within BT0734 at 909.955 kb on - strand, within BT0734 at 910.001 kb on + strand, within BT0734 at 910.002 kb on - strand, within BT0734 at 910.109 kb on + strand, within BT0734 at 910.138 kb on - strand, within BT0734 at 910.206 kb on - strand, within BT0734 at 910.332 kb on + strand at 910.369 kb on + strand at 910.396 kb on - strand at 910.471 kb on + strand at 910.494 kb on - strand at 910.516 kb on - strand at 910.516 kb on - strand at 910.715 kb on - strand, within BT0735 at 910.737 kb on - strand, within BT0735 at 910.762 kb on + strand, within BT0735 at 910.959 kb on + strand, within BT0735 at 911.078 kb on - strand, within BT0735 at 911.140 kb on - strand, within BT0735 at 911.531 kb on - strand, within BT0735 at 911.535 kb on - strand, within BT0735 at 911.751 kb on + strand, within BT0735 at 911.754 kb on - strand, within BT0735 at 911.977 kb on - strand, within BT0735 at 912.205 kb on + strand at 912.276 kb on + strand at 912.300 kb on + strand at 912.315 kb on + strand at 912.316 kb on - strand at 912.354 kb on - strand, within BT0736
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Rifampicin 0.000048828125 mM remove 909,706 - BT0734 0.64 -2.8 909,775 + BT0734 0.67 +1.0 909,776 - BT0734 0.67 -0.0 909,847 - BT0734 0.70 -0.4 909,864 + BT0734 0.71 -2.4 909,886 + BT0734 0.72 -2.6 909,952 + BT0734 0.75 -2.8 909,954 + BT0734 0.75 -0.8 909,955 - BT0734 0.76 -2.0 910,001 + BT0734 0.78 -2.0 910,002 - BT0734 0.78 -2.4 910,109 + BT0734 0.83 +1.0 910,138 - BT0734 0.84 +0.5 910,206 - BT0734 0.87 -0.9 910,332 + -0.2 910,369 + -1.6 910,396 - -1.4 910,471 + -3.5 910,494 - -0.0 910,516 - +1.0 910,516 - -1.0 910,715 - BT0735 0.14 -0.0 910,737 - BT0735 0.16 -1.8 910,762 + BT0735 0.17 -2.6 910,959 + BT0735 0.29 -2.8 911,078 - BT0735 0.36 -0.0 911,140 - BT0735 0.40 -3.5 911,531 - BT0735 0.63 -3.0 911,535 - BT0735 0.63 -0.0 911,751 + BT0735 0.76 -2.4 911,754 - BT0735 0.76 -1.0 911,977 - BT0735 0.90 -2.0 912,205 + -3.7 912,276 + -0.5 912,300 + -0.6 912,315 + +1.2 912,316 - -1.6 912,354 - BT0736 0.11 -0.0
Or see this region's nucleotide sequence