Experiment: BHIS with Rifampicin 0.000048828125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0591 and BT0592 are separated by 95 nucleotides BT0592 and BT0593 are separated by 26 nucleotides BT0593 and BT0594 are separated by 227 nucleotides BT0594 and BT0595 are separated by 87 nucleotides
BT0591: BT0591 - hypothetical protein (NCBI ptt file), at 731,431 to 732,882
BT0591
BT0592: BT0592 - conserved hypothetical protein (NCBI ptt file), at 732,978 to 733,763
BT0592
BT0593: BT0593 - conserved hypothetical protein (NCBI ptt file), at 733,790 to 734,155
BT0593
BT0594: BT0594 - hypothetical protein (NCBI ptt file), at 734,383 to 734,781
BT0594
BT0595: BT0595 - integrase (NCBI ptt file), at 734,869 to 735,825
BT0595
Position (kb) 733
734
735 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 732.871 kb on + strand at 732.874 kb on - strand at 732.974 kb on - strand at 732.979 kb on + strand at 733.003 kb on + strand at 733.004 kb on - strand at 733.079 kb on - strand, within BT0592 at 733.097 kb on + strand, within BT0592 at 733.103 kb on + strand, within BT0592 at 733.257 kb on - strand, within BT0592 at 733.431 kb on - strand, within BT0592 at 733.639 kb on - strand, within BT0592 at 733.650 kb on + strand, within BT0592 at 733.751 kb on - strand at 733.751 kb on - strand at 733.897 kb on - strand, within BT0593 at 733.897 kb on - strand, within BT0593 at 733.954 kb on + strand, within BT0593 at 734.002 kb on - strand, within BT0593 at 734.075 kb on - strand, within BT0593 at 734.156 kb on + strand at 734.157 kb on - strand at 734.222 kb on + strand at 734.400 kb on - strand at 734.508 kb on + strand, within BT0594 at 734.613 kb on - strand, within BT0594 at 734.845 kb on + strand at 734.852 kb on - strand at 735.000 kb on + strand, within BT0595 at 735.049 kb on + strand, within BT0595 at 735.100 kb on + strand, within BT0595 at 735.108 kb on + strand, within BT0595 at 735.120 kb on + strand, within BT0595 at 735.126 kb on + strand, within BT0595
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Rifampicin 0.000048828125 mM remove 732,871 + -1.0 732,874 - -1.0 732,974 - +0.0 732,979 + +0.4 733,003 + -1.0 733,004 - -3.0 733,079 - BT0592 0.13 -2.0 733,097 + BT0592 0.15 -3.3 733,103 + BT0592 0.16 +0.0 733,257 - BT0592 0.35 -1.4 733,431 - BT0592 0.58 -0.4 733,639 - BT0592 0.84 -1.9 733,650 + BT0592 0.85 -3.2 733,751 - -1.0 733,751 - -4.0 733,897 - BT0593 0.29 -3.8 733,897 - BT0593 0.29 -1.6 733,954 + BT0593 0.45 -3.2 734,002 - BT0593 0.58 +0.0 734,075 - BT0593 0.78 -1.0 734,156 + -1.0 734,157 - +0.0 734,222 + +1.0 734,400 - -0.7 734,508 + BT0594 0.31 +1.0 734,613 - BT0594 0.58 -0.4 734,845 + -2.2 734,852 - -1.6 735,000 + BT0595 0.14 -0.2 735,049 + BT0595 0.19 -1.4 735,100 + BT0595 0.24 +2.0 735,108 + BT0595 0.25 -0.4 735,120 + BT0595 0.26 -0.5 735,126 + BT0595 0.27 -1.0
Or see this region's nucleotide sequence