Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0079

Experiment: BHIS with Rifampicin 0.000048828125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0078 and BT0079 are separated by 298 nucleotidesBT0079 and BT0080 are separated by 43 nucleotidesBT0080 and BT0081 are separated by 24 nucleotidesBT0081 and BT0082 are separated by 97 nucleotides BT0078: BT0078 - putative DNA repair protein (NCBI ptt file), at 75,258 to 75,710 BT0078 BT0079: BT0079 - putative anti-restriction protein (NCBI ptt file), at 76,009 to 76,542 BT0079 BT0080: BT0080 - hypothetical protein (NCBI ptt file), at 76,586 to 76,798 BT0080 BT0081: BT0081 - hypothetical protein (NCBI ptt file), at 76,823 to 77,017 BT0081 BT0082: BT0082 - hypothetical protein (NCBI ptt file), at 77,115 to 78,035 BT0082 Position (kb) 76 77Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 75.041 kb on + strandat 75.065 kb on + strandat 75.071 kb on - strandat 75.118 kb on - strandat 75.186 kb on + strandat 75.314 kb on - strand, within BT0078at 75.338 kb on - strand, within BT0078at 75.359 kb on + strand, within BT0078at 75.359 kb on + strand, within BT0078at 75.360 kb on - strand, within BT0078at 75.378 kb on + strand, within BT0078at 75.412 kb on - strand, within BT0078at 75.458 kb on + strand, within BT0078at 75.459 kb on - strand, within BT0078at 75.488 kb on - strand, within BT0078at 75.521 kb on - strand, within BT0078at 75.554 kb on + strand, within BT0078at 75.606 kb on - strand, within BT0078at 75.640 kb on + strand, within BT0078at 75.641 kb on - strand, within BT0078at 75.739 kb on + strandat 75.767 kb on - strandat 75.774 kb on + strandat 75.774 kb on + strandat 75.823 kb on + strandat 75.824 kb on - strandat 75.826 kb on - strandat 75.839 kb on - strandat 75.874 kb on - strandat 75.894 kb on - strandat 75.986 kb on + strandat 76.020 kb on - strandat 76.042 kb on + strandat 76.043 kb on - strandat 76.043 kb on - strandat 76.054 kb on + strandat 76.064 kb on - strand, within BT0079at 76.064 kb on - strand, within BT0079at 76.095 kb on - strand, within BT0079at 76.095 kb on - strand, within BT0079at 76.329 kb on - strand, within BT0079at 76.329 kb on - strand, within BT0079at 76.329 kb on - strand, within BT0079at 76.354 kb on - strand, within BT0079at 76.388 kb on - strand, within BT0079at 76.412 kb on - strand, within BT0079at 76.459 kb on + strand, within BT0079at 76.495 kb on - strandat 76.504 kb on + strandat 76.544 kb on + strandat 76.601 kb on - strandat 76.601 kb on - strandat 76.647 kb on - strand, within BT0080at 76.687 kb on - strand, within BT0080at 76.691 kb on - strand, within BT0080at 76.792 kb on + strandat 76.809 kb on + strandat 76.819 kb on + strandat 76.820 kb on - strandat 76.822 kb on + strandat 76.881 kb on - strand, within BT0081at 76.885 kb on + strand, within BT0081at 76.956 kb on + strand, within BT0081at 76.964 kb on - strand, within BT0081at 76.973 kb on - strand, within BT0081at 77.107 kb on - strandat 77.110 kb on + strandat 77.171 kb on + strandat 77.193 kb on + strandat 77.193 kb on + strandat 77.213 kb on + strand, within BT0082at 77.215 kb on + strand, within BT0082at 77.216 kb on - strand, within BT0082at 77.218 kb on - strand, within BT0082at 77.218 kb on - strand, within BT0082at 77.219 kb on + strand, within BT0082at 77.219 kb on + strand, within BT0082at 77.219 kb on + strand, within BT0082at 77.220 kb on - strand, within BT0082at 77.220 kb on - strand, within BT0082at 77.220 kb on - strand, within BT0082at 77.225 kb on + strand, within BT0082at 77.282 kb on + strand, within BT0082at 77.288 kb on + strand, within BT0082at 77.312 kb on + strand, within BT0082at 77.351 kb on - strand, within BT0082at 77.376 kb on - strand, within BT0082at 77.376 kb on - strand, within BT0082at 77.385 kb on + strand, within BT0082at 77.427 kb on - strand, within BT0082at 77.430 kb on - strand, within BT0082at 77.460 kb on + strand, within BT0082at 77.471 kb on - strand, within BT0082at 77.478 kb on - strand, within BT0082at 77.481 kb on + strand, within BT0082at 77.519 kb on + strand, within BT0082at 77.519 kb on + strand, within BT0082at 77.520 kb on - strand, within BT0082at 77.520 kb on - strand, within BT0082

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Rifampicin 0.000048828125 mM
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75,041 + +0.7
75,065 + -1.5
75,071 - -1.9
75,118 - +0.5
75,186 + -0.9
75,314 - BT0078 0.12 -0.8
75,338 - BT0078 0.18 +0.1
75,359 + BT0078 0.22 +0.1
75,359 + BT0078 0.22 -0.3
75,360 - BT0078 0.23 -0.9
75,378 + BT0078 0.26 -0.9
75,412 - BT0078 0.34 -1.5
75,458 + BT0078 0.44 -1.5
75,459 - BT0078 0.44 +0.4
75,488 - BT0078 0.51 +0.7
75,521 - BT0078 0.58 -1.7
75,554 + BT0078 0.65 -0.5
75,606 - BT0078 0.77 +0.1
75,640 + BT0078 0.84 -0.5
75,641 - BT0078 0.85 -1.9
75,739 + -1.9
75,767 - -1.4
75,774 + +1.1
75,774 + +0.1
75,823 + -1.0
75,824 - +0.7
75,826 - -0.4
75,839 - -1.7
75,874 - +1.4
75,894 - +1.1
75,986 + -2.3
76,020 - -2.5
76,042 + -0.1
76,043 - -0.9
76,043 - +2.1
76,054 + -0.9
76,064 - BT0079 0.10 -1.5
76,064 - BT0079 0.10 +0.1
76,095 - BT0079 0.16 +1.1
76,095 - BT0079 0.16 -0.5
76,329 - BT0079 0.60 -0.7
76,329 - BT0079 0.60 +0.1
76,329 - BT0079 0.60 -1.9
76,354 - BT0079 0.65 -0.9
76,388 - BT0079 0.71 +0.1
76,412 - BT0079 0.75 -0.8
76,459 + BT0079 0.84 -0.5
76,495 - +0.4
76,504 + -1.1
76,544 + +0.1
76,601 - +0.1
76,601 - -0.9
76,647 - BT0080 0.29 -2.4
76,687 - BT0080 0.47 +2.1
76,691 - BT0080 0.49 -1.5
76,792 + +0.1
76,809 + -1.5
76,819 + -1.2
76,820 - -1.9
76,822 + +0.1
76,881 - BT0081 0.30 -2.3
76,885 + BT0081 0.32 -1.9
76,956 + BT0081 0.68 -1.8
76,964 - BT0081 0.72 -1.9
76,973 - BT0081 0.77 -1.9
77,107 - +2.4
77,110 + +1.1
77,171 + +1.7
77,193 + -0.7
77,193 + -0.9
77,213 + BT0082 0.11 -3.1
77,215 + BT0082 0.11 -0.5
77,216 - BT0082 0.11 -0.9
77,218 - BT0082 0.11 -1.0
77,218 - BT0082 0.11 -1.8
77,219 + BT0082 0.11 -2.5
77,219 + BT0082 0.11 +1.7
77,219 + BT0082 0.11 -0.9
77,220 - BT0082 0.11 -1.2
77,220 - BT0082 0.11 -3.0
77,220 - BT0082 0.11 -1.7
77,225 + BT0082 0.12 +0.1
77,282 + BT0082 0.18 -1.5
77,288 + BT0082 0.19 -0.2
77,312 + BT0082 0.21 -1.3
77,351 - BT0082 0.26 +0.4
77,376 - BT0082 0.28 -0.9
77,376 - BT0082 0.28 -1.7
77,385 + BT0082 0.29 -0.5
77,427 - BT0082 0.34 +2.1
77,430 - BT0082 0.34 -0.9
77,460 + BT0082 0.37 -1.8
77,471 - BT0082 0.39 +0.1
77,478 - BT0082 0.39 -1.9
77,481 + BT0082 0.40 -2.1
77,519 + BT0082 0.44 +1.3
77,519 + BT0082 0.44 -1.3
77,520 - BT0082 0.44 -1.7
77,520 - BT0082 0.44 -2.5

Or see this region's nucleotide sequence