Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32785

Experiment: exometabolites; 10% oxygen; 5 mM nitrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS32780 and RR42_RS32785 are separated by 19 nucleotidesRR42_RS32785 and RR42_RS32790 are separated by 380 nucleotidesRR42_RS32790 and RR42_RS32795 are separated by 53 nucleotides RR42_RS32780: RR42_RS32780 - multidrug transporter, at 2,748,078 to 2,748,986 _RS32780 RR42_RS32785: RR42_RS32785 - chemotaxis protein, at 2,749,006 to 2,750,937 _RS32785 RR42_RS32790: RR42_RS32790 - hypothetical protein, at 2,751,318 to 2,751,569 _RS32790 RR42_RS32795: RR42_RS32795 - DNA polymerase III subunit alpha, at 2,751,623 to 2,755,069 _RS32795 Position (kb) 2749 2750 2751Strain fitness (log2 ratio) -2 -1 0 1at 2748.255 kb on + strand, within RR42_RS32780at 2748.255 kb on + strand, within RR42_RS32780at 2748.256 kb on - strand, within RR42_RS32780at 2748.361 kb on - strand, within RR42_RS32780at 2748.493 kb on + strand, within RR42_RS32780at 2748.493 kb on + strand, within RR42_RS32780at 2748.493 kb on + strand, within RR42_RS32780at 2748.494 kb on - strand, within RR42_RS32780at 2748.610 kb on - strand, within RR42_RS32780at 2748.774 kb on + strand, within RR42_RS32780at 2748.774 kb on + strand, within RR42_RS32780at 2748.775 kb on - strand, within RR42_RS32780at 2748.775 kb on - strand, within RR42_RS32780at 2748.775 kb on - strand, within RR42_RS32780at 2748.804 kb on + strand, within RR42_RS32780at 2748.805 kb on - strand, within RR42_RS32780at 2749.884 kb on + strand, within RR42_RS32785at 2749.885 kb on - strand, within RR42_RS32785at 2750.432 kb on + strand, within RR42_RS32785at 2750.433 kb on - strand, within RR42_RS32785at 2750.830 kb on + strandat 2750.830 kb on + strandat 2750.853 kb on - strandat 2750.996 kb on - strandat 2751.095 kb on + strandat 2751.096 kb on - strandat 2751.096 kb on - strandat 2751.170 kb on + strandat 2751.322 kb on + strandat 2751.322 kb on + strandat 2751.567 kb on + strandat 2751.606 kb on + strandat 2751.625 kb on - strandat 2751.836 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate
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2,748,255 + RR42_RS32780 0.19 -0.7
2,748,255 + RR42_RS32780 0.19 -0.0
2,748,256 - RR42_RS32780 0.20 +0.2
2,748,361 - RR42_RS32780 0.31 -1.4
2,748,493 + RR42_RS32780 0.46 +0.2
2,748,493 + RR42_RS32780 0.46 -2.1
2,748,493 + RR42_RS32780 0.46 -0.7
2,748,494 - RR42_RS32780 0.46 +0.5
2,748,610 - RR42_RS32780 0.59 -0.5
2,748,774 + RR42_RS32780 0.77 +0.5
2,748,774 + RR42_RS32780 0.77 +0.1
2,748,775 - RR42_RS32780 0.77 -0.6
2,748,775 - RR42_RS32780 0.77 -0.3
2,748,775 - RR42_RS32780 0.77 -0.1
2,748,804 + RR42_RS32780 0.80 +0.9
2,748,805 - RR42_RS32780 0.80 +0.8
2,749,884 + RR42_RS32785 0.45 +0.3
2,749,885 - RR42_RS32785 0.45 +0.4
2,750,432 + RR42_RS32785 0.74 -0.1
2,750,433 - RR42_RS32785 0.74 +0.2
2,750,830 + +0.7
2,750,830 + -0.3
2,750,853 - -0.6
2,750,996 - -0.0
2,751,095 + +1.0
2,751,096 - -1.2
2,751,096 - -0.6
2,751,170 + +1.0
2,751,322 + -1.1
2,751,322 + +1.0
2,751,567 + +0.7
2,751,606 + -0.1
2,751,625 - -0.1
2,751,836 - -0.0

Or see this region's nucleotide sequence