Experiment: exometabolites; 10% oxygen; 5 mM nitrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS26180 and RR42_RS26185 are separated by 324 nucleotides RR42_RS26185 and RR42_RS26195 are separated by 885 nucleotides
RR42_RS26180: RR42_RS26180 - hypothetical protein, at 1,231,642 to 1,232,490
_RS26180
RR42_RS26185: RR42_RS26185 - hypothetical protein, at 1,232,815 to 1,234,317
_RS26185
RR42_RS26195: RR42_RS26195 - hypothetical protein, at 1,235,203 to 1,236,510
_RS26195
Position (kb) 1232
1233
1234
1235 Strain fitness (log2 ratio) -2
-1
0
1 at 1231.985 kb on - strand, within RR42_RS26180 at 1232.352 kb on - strand, within RR42_RS26180 at 1232.421 kb on - strand at 1232.443 kb on + strand at 1232.547 kb on - strand at 1232.671 kb on - strand at 1233.017 kb on - strand, within RR42_RS26185 at 1233.017 kb on - strand, within RR42_RS26185 at 1233.023 kb on - strand, within RR42_RS26185 at 1233.023 kb on - strand, within RR42_RS26185 at 1233.046 kb on + strand, within RR42_RS26185 at 1233.046 kb on + strand, within RR42_RS26185 at 1233.048 kb on + strand, within RR42_RS26185 at 1233.048 kb on + strand, within RR42_RS26185 at 1233.048 kb on + strand, within RR42_RS26185 at 1233.049 kb on - strand, within RR42_RS26185 at 1233.076 kb on + strand, within RR42_RS26185 at 1233.076 kb on + strand, within RR42_RS26185 at 1233.077 kb on - strand, within RR42_RS26185 at 1233.382 kb on + strand, within RR42_RS26185 at 1233.382 kb on + strand, within RR42_RS26185 at 1233.383 kb on - strand, within RR42_RS26185 at 1233.742 kb on + strand, within RR42_RS26185 at 1233.743 kb on - strand, within RR42_RS26185 at 1233.817 kb on + strand, within RR42_RS26185 at 1233.817 kb on + strand, within RR42_RS26185 at 1233.817 kb on + strand, within RR42_RS26185 at 1233.818 kb on - strand, within RR42_RS26185 at 1233.818 kb on - strand, within RR42_RS26185 at 1233.818 kb on - strand, within RR42_RS26185 at 1233.920 kb on + strand, within RR42_RS26185 at 1233.921 kb on - strand, within RR42_RS26185 at 1233.921 kb on - strand, within RR42_RS26185 at 1234.015 kb on + strand, within RR42_RS26185 at 1234.015 kb on + strand, within RR42_RS26185 at 1234.015 kb on + strand, within RR42_RS26185 at 1234.016 kb on - strand, within RR42_RS26185 at 1234.192 kb on + strand at 1234.192 kb on + strand at 1234.193 kb on - strand at 1234.550 kb on + strand at 1234.550 kb on + strand at 1234.551 kb on - strand at 1234.551 kb on - strand at 1234.551 kb on - strand at 1234.621 kb on + strand at 1234.622 kb on - strand at 1234.792 kb on + strand at 1234.793 kb on - strand at 1234.836 kb on + strand at 1234.836 kb on + strand at 1234.837 kb on - strand at 1235.013 kb on + strand at 1235.306 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate remove 1,231,985 - RR42_RS26180 0.40 -0.3 1,232,352 - RR42_RS26180 0.84 +0.0 1,232,421 - +0.3 1,232,443 + -0.6 1,232,547 - +0.4 1,232,671 - -0.3 1,233,017 - RR42_RS26185 0.13 -0.6 1,233,017 - RR42_RS26185 0.13 -0.5 1,233,023 - RR42_RS26185 0.14 -0.4 1,233,023 - RR42_RS26185 0.14 -1.1 1,233,046 + RR42_RS26185 0.15 +0.9 1,233,046 + RR42_RS26185 0.15 -0.6 1,233,048 + RR42_RS26185 0.16 +0.1 1,233,048 + RR42_RS26185 0.16 +0.1 1,233,048 + RR42_RS26185 0.16 -0.3 1,233,049 - RR42_RS26185 0.16 +0.5 1,233,076 + RR42_RS26185 0.17 +0.7 1,233,076 + RR42_RS26185 0.17 +0.9 1,233,077 - RR42_RS26185 0.17 +0.3 1,233,382 + RR42_RS26185 0.38 +0.4 1,233,382 + RR42_RS26185 0.38 +0.1 1,233,383 - RR42_RS26185 0.38 +0.6 1,233,742 + RR42_RS26185 0.62 +0.3 1,233,743 - RR42_RS26185 0.62 +0.2 1,233,817 + RR42_RS26185 0.67 -0.3 1,233,817 + RR42_RS26185 0.67 +0.3 1,233,817 + RR42_RS26185 0.67 -1.0 1,233,818 - RR42_RS26185 0.67 +0.9 1,233,818 - RR42_RS26185 0.67 +0.3 1,233,818 - RR42_RS26185 0.67 -0.2 1,233,920 + RR42_RS26185 0.74 -0.3 1,233,921 - RR42_RS26185 0.74 +1.0 1,233,921 - RR42_RS26185 0.74 +0.0 1,234,015 + RR42_RS26185 0.80 +0.1 1,234,015 + RR42_RS26185 0.80 +1.1 1,234,015 + RR42_RS26185 0.80 -0.9 1,234,016 - RR42_RS26185 0.80 -0.0 1,234,192 + -0.1 1,234,192 + +1.7 1,234,193 - +0.3 1,234,550 + -0.1 1,234,550 + -0.3 1,234,551 - -0.2 1,234,551 - -0.1 1,234,551 - -0.4 1,234,621 + -2.0 1,234,622 - -0.6 1,234,792 + -0.5 1,234,793 - +0.5 1,234,836 + +0.2 1,234,836 + +0.9 1,234,837 - -0.1 1,235,013 + -1.1 1,235,306 + -0.9
Or see this region's nucleotide sequence